Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq991 89.7 1e-12 seq7536 86.0 1e-11 >seq991 Length=31322 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||| || ||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 27957 GCCCGGCTAGTTCGGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 28016 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 28017 CCCACGTTGGGC 28028 >seq7536 Length=6262 Score = 86.0 bits (94), Expect = 1e-11 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165712 CCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCC 165771 ||| ||||||||||||||||||| | ||||| ||||||| | ||||||||||||| |||| Sbjct 1897 CCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGTGCCC 1838 Query 165772 CACGATGGGC 165781 |||| | ||| Sbjct 1837 CACGTTAGGC 1828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057604272765560