Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2 158 1e-33 >seq2 Length=118199 Score = 158 bits (174), Expect = 1e-33 Identities = 495/759 (65%), Gaps = 12/759 (2%) Strand=Plus/Plus Query 16799 TCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACC 16858 || || ||| || ||| || |||||||| ||| |||||||| || || | | || Sbjct 63018 TCAGCCACATATCTTATGTACTGGCACATCAATCGACAGTTCATGCCAATCAAATCAACG 63077 Query 16859 GGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCA 16918 |||||||| || || | ||| ||| || |||| || || || || | Sbjct 63078 GGAAGAGCGTCAGTGAGGAATTCACACTCAATCTCAACAGCATCACGCATGATCTCATGG 63137 Query 16919 ACTCGTTCCTCGGACGGTGTATGTTTAAGATGT--TTAAACATCAGACATGCGAAATCGC 16976 || || | | ||||| | ||| | ||||| || || |||||||| |||||||| Sbjct 63138 ACACGCTTAGCCGACGGCTT--GTTCACGATGTGCTTGAAAATCAGACAGGCGAAATCTG 63195 Query 16977 AATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTC 17036 || | |||||||| | ||| || | |||||| || || | || ||||| | Sbjct 63196 TGTGCAGACCCTCGTCACGGCTAATCAACTCGTTACTGAAGGTGAGACCCGGCATTAGGC 63255 Query 17037 CTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGG 17096 | || ||||| ||||| || |||| |||||| || || || ||||| | ||||| || | Sbjct 63256 CACGCTTCTTCAACCAGAAGATCGAGGCGAATGAACCCGAGAAGAAAACCCCCTCCACTG 63315 Query 17097 ATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCA 17156 |||||||| || | || || || ||||||||||||||||| ||||| || | Sbjct 63316 CAGCAAACGCCATAACACGCTCCGCATACGTCGCGTCTTTGTTCGCGATCCACCTCAGTG 63375 Query 17157 CCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT--AAATAATTTCTC 17214 |||| || || || | ||| | || || || || || || || | | || || | Sbjct 63376 CCCAATCCGCCTTCTTCTTCACACATGGCAGAGTCTCAATCGCATTGAAGAGAAAATCAC 63435 Query 17215 TTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTAT 17274 || | | | || | | || ||||||||||| || ||||| || ||||| || Sbjct 63436 GCTTGGCCG--GCTCTTTCACGTAGGTATCGATGAGCAGTGAATACATCTCCGAGTGGAT 63493 Query 17275 GTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCAC 17334 |||||| | || || || | || || || || || ||||||| |||||||| || Sbjct 63494 GTTCTCTACTGCAATTTGCATCCCATAGAAACAACGAGCTTCCGGAATTTGAACCTCTTG 63553 Query 17335 GTAGAATCGTTC-CGC-TAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCC 17392 | |||| |||| || | ||| |||||||| || ||||| || || ||||| || ||| Sbjct 63554 GCAGAA--GTTCATGCACAAATTCTCGTTCACAATTCCGTCACTGGCTGCGAAGAAAGCC 63611 Query 17393 AATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCT 17452 | | || || || | || | | || |||||| | | |||| Sbjct 63612 AGCACGTGGGAGATAAAGTGACGCTCACCATCATTCAGTCTCTCCCAGTCAGTGAGATCT 63671 Query 17453 TTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTC 17512 || | | || || || || |||||| || |||||||||||| || || | | | Sbjct 63672 TTCGTCAAGTCAACCTCCTCCACGGTCCAGAAGGAAGCCACTGCCTTCTTGTAGAACTCC 63731 Query 17513 CAAATATCATTGTATTGTATGGGGAATACAACATATCTA 17551 || ||||| | |||||| ||||| | |||||| | ||| Sbjct 63732 CATATATCGTGGTATTGGATGGGCATCACAACAAACCTA 63770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517440719384160