Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 241 2e-58 seq1443 215 6e-51 >seq2 Length=118199 Score = 241 bits (266), Expect = 2e-58 Identities = 440/637 (69%), Gaps = 13/637 (2%) Strand=Plus/Plus Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 || || || |||| ||| |||||||| ||| ||||||||||| | ||||| || ||| Sbjct 63168 TGCTTGAAAATCAGACAGGCGAAATCTGTGTGCAGACCCTCGTCACGGCTAATCAACTCG 63227 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 || || ||||| || ||||||||||||||||| || | ||| || || || || ||| Sbjct 63228 TTACTGAAGGTGAGACCCGGCATTAGGCCACGCTTCTTCAACCAGAAGATCGAGGCGAAT 63287 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCG 24299 || || || ||||||| || || ||||| ||||| || |||| | || |||| || Sbjct 63288 GAACCCGAGAAGAAAACCCCCTCCACTGCAGCAAACGCCATAACACGCTCCGCATA--CG 63345 Query 24300 GCGCTGTC-ATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 24353 ||| ||| ||| |||||| | | |||||||| |||||||| || ||||| ||| Sbjct 63346 TCGC-GTCTTTGTTCGCGATCCACCTCAGTGCCCAATCCGCCTTCTTCTTCACACATGGC 63404 Query 24354 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 24413 | ||||| || ||||| |||||| | | | ||||| || || ||||| Sbjct 63405 AGAGTCTCAATCGCATTGAAGAGAAAATCACGCTTGGCCGGCTCTTTCACGTAGGTATCG 63464 Query 24414 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 24473 || | || |||||| ||||| || ||||| || | || ||||| | || |||||| Sbjct 63465 ATGAGCAGTGAATACATCTCCGAGTGGATGTTCTCTACTGCAATTTGCATCCCATAGAAA 63524 Query 24474 CATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC-TGC-TAAATTTTCATTCA 24531 || | ||| || | ||| || || ||| || || |||| ||| ||||| || |||| Sbjct 63525 CAACGAGCTTCCGGAATTTGAACCTCTTGGCAGAA--GTTCATGCACAAATTCTCGTTCA 63582 Query 24532 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG 24591 | ||||||||||||||||| || || |||| || || ||||| | || | Sbjct 63583 CAATTCCGTCACTGGCTGCGAAGAAAGCCAGCACGTGGGAGATAAAGTGACGCTCACCAT 63642 Query 24592 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 24651 | ||| | | ||| ||| ||| |||||| | | || || || ||||| ||||| | Sbjct 63643 CATTCAGTCTCTCCCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGA 63702 Query 24652 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 24711 | || ||| ||||||| || || | | ||| || || || ||||| || || | | || Sbjct 63703 AGGAAGCCACTGCCTTCTTGTAGAACTCCCATATATCGTGGTATTGGATGGGCATCACAA 63762 Query 24712 CAAATCTATTTGGATTTTTTGCAAGGATTGGTTCCAT 24748 |||| ||| | || || |||||| ||||| || Sbjct 63763 CAAACCTACTGGGGTTCGGCTCAAGGAGGGGTTCAAT 63799 >seq1443 Length=26160 Score = 215 bits (238), Expect = 6e-51 Identities = 424/618 (69%), Gaps = 12/618 (2%) Strand=Plus/Plus Query 53950 TTCAAACTCGTCTCCCCAAACATTGT-CCAATCCAGGACATTCATCCGGACACATCAACG 54008 ||| ||||| ||||||||| || | | ||| || || ||||| | ||| ||| || | Sbjct 13565 TTCGAACTCCTCTCCCCAA-CAGTCTGCCAGACCGGGGCATTCGTGAGGATCCATGAAAG 13623 Query 54009 ACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 |||| |||| ||||| | || | | ||| || |||||||||||||| ||||| | Sbjct 13624 TCCACATCTCA-TCATCATGAACCCTCTGCATGAAAAGATCAGGAATCCAGAGAGCCAGG 13682 Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127 || |||||||| | | | |||||| || || || | || || | |||| | Sbjct 13683 AAGAGATCTCTAGCACGAATCTCCTCGGCCCCAGTGTTTCTACGCAGCTCTATGAACTGC 13742 Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCT 54187 | | ||||| |||||| ||||| | ||||| | | | | || || || || || || Sbjct 13743 AAGACATCAGGATGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTCCCA 13802 Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 54247 || || || | || ||||||||| |||| || |||| || ||| |||| | |||||| Sbjct 13803 CCTTGGTCCACATACCTAGCGGTGCTATTGTACACTCGCAGCATGGGAACCAAGCCATTG 13862 Query 54248 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATA 54305 ||| |||||||||| |||| |||| | | || || |||||| | | | ||| | Sbjct 13863 GATTCACCATTGGTTCCGGCGATAAAAGTGCCCTTGCTACGAATACAATGCACATT--AA 13920 Query 54306 GACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 54365 |||| | || || || | || ||||| || || ||| | || | ||||| ||||| | Sbjct 13921 GACCAACGCCTCCAGCGTTCTTTGAGATCAAGGCACATTGCTTGAGTGTATCGTAGATAC 13980 Query 54366 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT-- 54423 |||| ||||| || ||| |||| | || || |||||||| ||||| || || ||| Sbjct 13981 CCTCGATACTGTCGTCCTTCATCGTGAGAAGGAAACAGCTCGACATCTGAGGA--ACTGG 14038 Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 || |||| ||| || | || ||||| || || || ||||| |||| ||| | ||| | Sbjct 14039 TGTGCCCGAATTGAAGAGAGTCGGAGAGGCCTGAGTGAACCACTTTTGAGACATTAGGTG 14098 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 |||||||| | || | || | ||| || || || || | | || ||||| || Sbjct 14099 ATACGTCTCAAAGGCAGCTTCGAGATCATATCCGTGGATGCCCAAGGACACGCGCATAAA 14158 Query 54544 CATGTGCTGAGGTCTTTC 54561 ||| ||||| ||||| || Sbjct 14159 CATATGCTGCGGTCTCTC 14176 Score = 104 bits (114), Expect = 3e-17 Identities = 312/472 (66%), Gaps = 15/472 (3%) Strand=Plus/Plus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 ||||| | |||||||| ||| || ||| ||| || || || || ||||||||||| Sbjct 12154 TTGTCAATTGTGAATTTAATCGGGTCGGCTGCAGGACGGGTTCGGAGGTAGTACATTCCA 12213 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 || || || || |||| | || |||||||| || | || ||| | || Sbjct 12214 GTCTTCAGTCCCTTCTTCCACGCATAGAAATGCATGGAAGTGATCTTACCATAGTTGGGT 12273 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || || |||| ||||| || ||||| ||||| ||||| | | | |||||||| Sbjct 12274 TCCTTCATGTGGAGATTCAACGACTGACTCTGATCTATGAAAGGAGCACGATCTGCAGCT 12333 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 53037 | | || ||||| || |||||||| ||||| | ||| || || ||| | ||||||||| Sbjct 12334 AGATCAATAATCGTTTTCTGTGGAATCTCCCAGACAGTCTTGTACAACGC-CTTAATATC 12392 Query 53038 TTCTGGAA---GGTTTGTATTCTGAATAGATCCACCATCTACCATAAT--CCTATTCTTG 53092 ||||||| || | | ||||||||| || || | || || || || ||| Sbjct 12393 GTCTGGAATGCCGTCGATGTGCTGAATAGAACCCTGATTGGCAATTATTGCCAAT--TTG 12450 Query 53093 ATCTCATCATTCCATAATTTTC-TCTCGGTTAAAACTCTAAGGAGATGCGG--ATTAACT 53149 | | ||| ||| ||| | ||| | | |||| | | ||| || ||| || Sbjct 12451 AGGGCCTCAGACCA-AATGCCCAAATCGATGAGGTCTCTCA--ACATGTGGCTATTGACA 12507 Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 | || || |||||||| | || | || | | | |||||| ||| ||||| Sbjct 12508 ATCTGGAAATCTCCAGAAAGAACACGACGCGAAAATACATTACTCGTAATGGGTTCAGTT 12567 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 53261 ||||| | ||||||| |||||||||||||||||||| ||||| ||||| Sbjct 12568 GACTCGGTGTTTCCCAGGATTTGAGCAGTTGATGCAGTGGGCATTAATGCCA 12619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593601282317760