Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1486 102 7e-17 seq14526 82.4 7e-11 seq4364 82.4 7e-11 >seq1486 Length=25894 Score = 102 bits (112), Expect = 7e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 28956 GTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAA 29015 || || ||||| || || | || || || || |||||||| || || ||| ||| Sbjct 18279 GTTAATATGCAGATCTTTGTTAAGACTTTAACTGGCAAAACTATCACTCTTGAAGTTGAA 18338 Query 29016 CCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTA 29075 || |||| | | | || | ||| |||||| ||||| |||||| | || | Sbjct 18339 CCTTCAGATTCCATCGAAAATGTGAAGGCCAAAATTCAGGATAAGGAAGGTATTCCTCCA 18398 Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||||||| | | |||||||| |||||||| || |||||| | ||| | | || Sbjct 18399 GATCAACAACGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGCCGTACTCTATCGGAC 18458 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||| || |||||||||||||| ||||| |||||||||| Sbjct 18459 TACAACATCCAGAAGGAATCTACCCTTCATTTGGTGTTACG 18499 >seq14526 Length=1284 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| |||| || | || || ||||| |||||| ||| |||||| Sbjct 1164 AATGCAGATCTTCGTCAAGACCCTAACTGGTAAAACTATTACCCTTGAAGTTGAACCCAG 1105 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || | | | || | || |||||| ||||| ||||| | || |||||| Sbjct 1104 TGATTCAATTGAAAATGTAAAAGCGAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCA 1045 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| | ||||| || || || |||||| | || ||| | ||| || | |||||||| Sbjct 1044 GCAACGTCTTATATTCGCCGGTAAACAATTAGAGGATGGCCGCACTTTGTCTGATTACAA 985 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| || || || ||||| |||||| |||| ||||| | |||| || Sbjct 984 TATACAAAAAGAGTCTACGCTTCACTTGGTTCTACGACTTAGAGGTGG 937 >seq4364 Length=12272 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| |||| || | || || ||||| |||||| ||| |||||| Sbjct 3681 AATGCAGATCTTCGTCAAGACCCTAACTGGTAAAACTATTACCCTTGAAGTTGAACCCAG 3622 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || | | | || | || |||||| ||||| ||||| | || |||||| Sbjct 3621 TGATTCAATTGAAAATGTAAAAGCGAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCA 3562 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| | ||||| || || || |||||| | || ||| | ||| || | |||||||| Sbjct 3561 GCAACGTCTTATATTCGCCGGTAAACAATTAGAGGATGGCCGCACTTTGTCTGATTACAA 3502 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGG 29185 ||| || || || ||||| |||||| |||| ||||| | |||| Sbjct 3501 TATACAAAAAGAGTCTACGCTTCACTTGGTTCTACGACTTAGAGG 3457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428251367766860