Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1486 93.3 3e-14 seq14526 91.5 1e-13 seq4364 91.5 1e-13 >seq1486 Length=25894 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 25029 GTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAA 25088 || || ||||| || || | || || || || |||||||| || || ||| ||| Sbjct 18279 GTTAATATGCAGATCTTTGTTAAGACTTTAACTGGCAAAACTATCACTCTTGAAGTTGAA 18338 Query 25089 CCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTA 25148 || |||| | | | || | ||| |||||| ||||| |||||| | || | Sbjct 18339 CCTTCAGATTCCATCGAAAATGTGAAGGCCAAAATTCAGGATAAGGAAGGTATTCCTCCA 18398 Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||||||| | | |||||||| |||||||| | |||||| | ||| | | || Sbjct 18399 GATCAACAACGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGCCGTACTCTATCGGAC 18458 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||| || || ||||||||||| ||||| |||||||||| Sbjct 18459 TACAACATCCAGAAGGAATCTACCCTTCATTTGGTGTTACG 18499 >seq14526 Length=1284 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || ||| |||| || | || || ||||| |||||| ||| |||||| Sbjct 1164 AATGCAGATCTTCGTCAAGACCCTAACTGGTAAAACTATTACCCTTGAAGTTGAACCCAG 1105 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || | | | || | || |||||| ||||| ||||| | || |||||| Sbjct 1104 TGATTCAATTGAAAATGTAAAAGCGAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCA 1045 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | ||||| || || || |||||||| || ||| | ||| || | |||||||| Sbjct 1044 GCAACGTCTTATATTCGCCGGTAAACAATTAGAGGATGGCCGCACTTTGTCTGATTACAA 985 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| ||||| || ||||| |||||| |||| ||||| | |||| || Sbjct 984 TATACAAAAAGAGTCTACGCTTCACTTGGTTCTACGACTTAGAGGTGG 937 >seq4364 Length=12272 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || ||| |||| || | || || ||||| |||||| ||| |||||| Sbjct 3681 AATGCAGATCTTCGTCAAGACCCTAACTGGTAAAACTATTACCCTTGAAGTTGAACCCAG 3622 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || | | | || | || |||||| ||||| ||||| | || |||||| Sbjct 3621 TGATTCAATTGAAAATGTAAAAGCGAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCA 3562 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | ||||| || || || |||||||| || ||| | ||| || | |||||||| Sbjct 3561 GCAACGTCTTATATTCGCCGGTAAACAATTAGAGGATGGCCGCACTTTGTCTGATTACAA 3502 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGG 25258 ||| ||||| || ||||| |||||| |||| ||||| | |||| Sbjct 3501 TATACAAAAAGAGTCTACGCTTCACTTGGTTCTACGACTTAGAGG 3457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410715633227768