Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2 244 1e-59 seq1635 131 2e-25 seq14526 123 3e-23 seq4364 114 1e-20 seq1486 82.4 8e-11 >seq2 Length=118199 Score = 244 bits (270), Expect = 1e-59 Identities = 424/615 (69%), Gaps = 6/615 (1%) Strand=Plus/Minus Query 116593 GAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAA 116652 ||||||| | |||| || | | ||||| ||||||| || || ||| | ||||| Sbjct 63779 GAACCCCAGTAGGTTTGTTGTGATGCCCATCCAATACCACGATATATGGGAGTTCTACAA 63720 Query 116653 AAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGA 116712 ||||| | ||| || ||||||||||| |||||||| ||| || | || || | || Sbjct 63719 GAAGGCAGTGGCTTCCTTCTGGACCGTGGAGGAGGTTGACTTGACGAAAGATCTCACTGA 63660 Query 116713 CTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGC 116772 ||||||| | |||| || ||||| || || ||| ||||||||||| || ||||| Sbjct 63659 CTGGGAGAGACTGAATGATGGTGAGCGTCACTTTATCTCCCACGTGCTGGCTTTCTTCGC 63600 Query 116773 CGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGT 116832 ||||| ||||| || || ||||||||| || | | ||| || ||||| || | Sbjct 63599 AGCCAGTGACGGAATTGTGAACGAGAATTTGTGCATGAACTTCTGCCAAGAGGTTCAAAT 63540 Query 116833 GGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAAT 116892 | || || || || ||||| || | || || || | |||||| | |||||||| || Sbjct 63539 TCCGGAAGCTCGTTGTTTCTATGGGATGCAAATTGCAGTAGAGAACATCCACTCGGAGAT 63480 Query 116893 GTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTT---TGTT 116949 |||||| |||||||| || |||||| | || |||| || | || Sbjct 63479 GTATTCACTGCTCATCGATACCTACGTG---AAAGAGCCGGCCAAGCGTGATTTTCTCTT 63423 Query 116950 GAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGAT 117009 || || || ||||| |||| || || || ||||||| || ||||| ||| | ||||| Sbjct 63422 CAATGCGATTGAGACTCTGCCATGTGTGAAGAAGAAGGCGGATTGGGCACTGAGGTGGAT 63363 Query 117010 CGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGT 117069 ||| || ||| || | | | ||||| | |||| || || || || ||||| || Sbjct 63362 CGCGAACAAAGACGCGACGTATGCGGAGCGTGTTATGGCGTTTGCTGCAGTGGAGGGGGT 63303 Query 117070 CTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGG 117129 ||||| ||||| |||||| | || || ||| | ||||| || ||||| ||||| || Sbjct 63302 TTTCTTCTCGGGTTCATTCGCCTCGATCTTCTGGTTGAAGAAGCGTGGCCTAATGCCGGG 63243 Query 117130 CCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 || || ||||| |||||| | || | | |||||||||||||| || || ||||| Sbjct 63242 TCTCACCTTCAGTAACGAGTTGATTAGCCGTGACGAGGGTCTGCACACAGATTTCGCCTG 63183 Query 117190 TTTGCTGTTCAAGCA 117204 | || | |||||||| Sbjct 63182 TCTGATTTTCAAGCA 63168 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 116593 GAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAA 116652 ||||||| | |||| || | | ||||| ||||||| || || ||| | ||||| Sbjct 73282 GAACCCCAGTAGGTTTGTTGTGATGCCCATCCAATACCACGATATATGGGAGTTCTACAA 73223 Query 116653 AAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGA 116712 ||||| | ||| || ||||||||||| |||||||| ||| || | || || | || Sbjct 73222 GAAGGCAGTGGCTTCCTTCTGGACCGTGGAGGAGGTTGACTTGACGAAAGATCTCACTGA 73163 Query 116713 CTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGC 116772 ||||||| | |||| || ||||| || || ||| ||||||||||| || ||||| Sbjct 73162 CTGGGAGAGACTGAATGATGGTGAGCGTCACTTTATCTCCCACGTGCTGGCTTTCTTCGC 73103 Query 116773 CGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 ||||| ||||| || || ||||||||| || Sbjct 73102 AGCCAGTGACGGAATTGTGAACGAGAATTTG 73072 >seq1635 Length=24574 Score = 131 bits (144), Expect = 2e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| || ||||| || || |||| || || | | Sbjct 15275 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACAATTACTCTCGAGGTTGAGCCGAGT 15334 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | | |||| || |||| ||||| |||||||||||| | || || Sbjct 15335 GACACGATTGAGAATG-TGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCA 15393 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||||||| | ||| |||||||||||||| || | |||||| || |||||||| Sbjct 15394 ACAACGACTCATTTTCGCTGGCAAACAGCTGGAAGAGGGGCGCACTCTTTCTGACTACAA 15453 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||| | || || ||||| ||| Sbjct 15454 TATCCAGAAGGAATCAACTCTCCATCTTGTG 15484 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| || ||||| || || |||| || || | | Sbjct 5788 ATGCAAATTTTTGTGAAGACCCTCACCGGTAAAACAATAACTCTCGAGGTTGAGCCGAGT 5729 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | | |||| || |||| ||||| |||||||||||| | || || Sbjct 5728 GACACGATTGAGAATG-TGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCA 5670 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||||||| | ||| || || |||||||| |||| || || || |||||||| Sbjct 5669 ACAACGACTCATTTTCGCTGGTAAGCAGCTGGAAGACGGACGTACTCTATCTGACTACAA 5610 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||| | || || ||||| ||| Sbjct 5609 TATCCAGAAGGAATCTACTCTCCATCTTGTG 5579 Score = 113 bits (124), Expect = 5e-20 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | || || ||||||||||| | ||| ||||| |||||||| Sbjct 16389 GACAAGGAGGGCATCCCCCCAGATCAACAACGACTCATTTTCGCTGGCAAGCAGCTGGAA 16448 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||| || || || || |||||||| ||||||||||| | || || ||||||||| Sbjct 16449 GACGGACGTACTCTTAATGACTACAATATCCAGAAGGAATCAACTCTACATCTAGTG 16505 >seq14526 Length=1284 Score = 123 bits (136), Expect = 3e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || || ||||| || ||||| || || |||| || || | | Sbjct 708 AATGCAAATTTTTGTGAAGACCCTCACCGGTAAAACAATTACTCTCGAGGTTGAGCCGAG 649 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | || | || |||| ||||| |||||||||||| | || || Sbjct 648 TGACTCGATAGAGAATGTGAAAGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCA 589 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||||||| | ||| ||||| |||||||| |||| || || || || |||||||| Sbjct 588 ACAACGACTCATTTTCGCTGGCAAGCAGCTGGAAGACGGACGTACTCTTAATGACTACAA 529 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||| | || || ||||||||| Sbjct 528 TATCCAGAAGGAATCAACTCTCCATCTAGTG 498 >seq4364 Length=12272 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| |||||||||||| | || || ||||||||||| | ||| ||||| Sbjct 3441 AAGATTCAGGACAAGGAGGGCATCCCCCCAGATCAACAACGACTCATTTTCGCTGGCAAG 3382 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||| |||| || || || || |||||||| ||||||||||| | || || ||| Sbjct 3381 CAGCTGGAAGACGGACGTACTCTTAATGACTACAATATCCAGAAGGAATCAACTCTCCAT 3322 Query 40894 CTAGTG 40899 |||||| Sbjct 3321 CTAGTG 3316 Score = 111 bits (122), Expect = 2e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || || ||||| || ||||| || || |||| || || | | Sbjct 3909 AATGCAAATTTTTGTGAAGACCCTCACCGGTAAAACAATTACTCTCGAGGTTGAGCCGAG 3850 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | || | || |||| ||||| |||||||||||| | || || Sbjct 3849 TGACTCGATAGAGAATGTGAAAGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCA 3790 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||||||| | ||| ||||| ||| |||| |||| || || || |||||||| Sbjct 3789 ACAACGACTCATTTTCGCTGGCAAGCAGTTGGAAGACGGACGTACTCTATCTGACTACAA 3730 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||| | || || ||||||||| Sbjct 3729 TATCCAGAAGGAATCTACTCTACATCTAGTG 3699 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||||||||| || || || || || || || |||| || ||| | Sbjct 4140 AAACATGCAGATTTTCGTAAAAACTCTTACTGGGAAGACTATAACGCTCGAAGTGGAACC 4081 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | | | | | || | || |||| || || ||||| ||||| | || Sbjct 4080 TAGTGATACAATTGAGAATGTAAAAGCCAAGATTCAAGATAAGGAGGGAATCCCACCAGA 4021 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| ||| |||| || | || ||||| || |||| || | ||||| || ||||| Sbjct 4020 CCAACAAAGACTGATTTTTGCCGGCAAGCAATTGGAAGATGGACGCACTCTTTCTGACTA 3961 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||| |||||| |||| | || || || ||||| Sbjct 3960 CAACATCCAAAAGGAGTCCACCTTACACCTTGTTTTGCG 3922 >seq1486 Length=25894 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || | || |||||||| ||||| | || || ||| | Sbjct 18282 AATATGCAGATCTTTGTTAAGACTTTAACTGGCAAAACTATCACTCTTGAAGTTGAACCT 18341 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | ||| | |||| ||||||| || || || || || || | || Sbjct 18342 TCAGATTCCATCGAAAATGTGAAGGCCAAAATTCAGGATAAGGAAGGTATTCCTCCAGAT 18401 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||||| | |||| || ||||||||||| || || | || || || |||||| Sbjct 18402 CAACAACGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGCCGTACTCTATCGGACTAC 18461 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||| | || || ||| | ||||| || Sbjct 18462 AACATCCAGAAGGAATCTACCCTTCATTTGGTGTTACG 18499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515114790829120