Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq14526 111 1e-19 seq4364 111 1e-19 seq1635 93.3 4e-14 >seq14526 Length=1284 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||||||||| || |||||||| || |||||| |||||| Sbjct 955 ACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTCT 1014 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||||| || ||| | || ||||| |||||||| ||||| || || ||||| ||| | Sbjct 1015 AATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGA 1074 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| || | ||| | | || || || || || | ||| | ||||| Sbjct 1075 ATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTTA 1134 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || || |||||||| Sbjct 1135 CCAGTTAGGGTCTTGACGAAGATCTGCAT 1163 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || || || || || ||||| || | | ||| || || || ||||| Sbjct 505 TGGAGAGTTGATTCCTTCTGGATATTGTAGTCATTAAGAGTACGTCCGTCTTCCAGCTGC 564 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| | ||||| || || ||||| || || |||||||||||||| ||| || Sbjct 565 TTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGAATCTTC 624 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 ||| || | || | | ||| | ||| ||||||| || | ||||| ||||| Sbjct 625 GCTTTCACATTCTCTATCGAGTCACTCGGCTCAACCTCGAGAGTAATTGTTTTACCGGTG 684 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || |||||||| ||||| Sbjct 685 AGGGTCTTCACAAAAATTTGCAT 707 >seq4364 Length=12272 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||||||||| || |||||||| || |||||| |||||| Sbjct 3472 ACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTCT 3531 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||||| || ||| | || ||||| |||||||| ||||| || || ||||| ||| | Sbjct 3532 AATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGA 3591 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| || | ||| | | || || || || || | ||| | ||||| Sbjct 3592 ATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTTA 3651 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || || |||||||| Sbjct 3652 CCAGTTAGGGTCTTGACGAAGATCTGCAT 3680 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || ||||| || ||||| || | || || ||| || ||||| || ||| Sbjct 7024 GTGGATTCCTTTTGGATATTGTAGTCCGAGAGGGTACGACCATCTTCAAGCTGCTTGCCA 6965 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| |||||||| || || || || ||||| ||||||||| ||| || ||| Sbjct 6964 GCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTA 6905 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || || |||||| || | || | ||||| || || ||||| Sbjct 6904 ACATTCTCTATGGTATCACTGGGCTCGACTTCAAGTGTAATGGTTTTACCAGTGAGAGTC 6845 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||||||||| Sbjct 6844 TTCACAAAAATCTGCAT 6828 >seq1635 Length=24574 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || || || || ||||| || | ||||||| || || | Sbjct 15482 CAAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGCCCCTCTTCCA 15423 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||||||| |||||| | ||||| || || ||||| || || |||||||||||||| || Sbjct 15422 GCTGTTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGAA 15363 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | ||||| | ||| ||||||| || | ||||| | Sbjct 15362 TCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAACCTCGAGAGTAATTGTTTTTC 15303 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || || |||||||| ||||| Sbjct 15302 CAGTGAGGGTCTTCACAAAAATTTGCAT 15275 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||||| || || || || ||||| || | ||| || || || | Sbjct 5581 CAAGATGGAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCGTCTTCCA 5640 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || |||||| | ||||| || || ||||| || || |||||||||||||| || Sbjct 5641 GCTGCTTACCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGAA 5700 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | ||||| | ||| ||||||| || | ||||| | Sbjct 5701 TCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAACCTCGAGAGTTATTGTTTTAC 5760 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || || || |||||||| ||||| Sbjct 5761 CGGTGAGGGTCTTCACAAAAATTTGCAT 5788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433744682162704