Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1635 123 3e-23 seq14526 82.4 9e-11 seq4364 82.4 9e-11 >seq1635 Length=24574 Score = 123 bits (136), Expect = 3e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || |||||||| |||| ||||| || |||| || ||||||||||||||||| Sbjct 5598 TCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCGTCTTCCAGCTGCTTACCAGCGAAA 5657 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 |||||||| || || || | || | || |||||||||| ||| | || | || | | Sbjct 5658 ATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACATT 5716 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||| |||| || || |||| || || ||||| || || || ||||| || Sbjct 5717 CTCAATCGTGTCACTCGGCTCAACCTCGAGAGTTATTGTTTTACCGGTGAGGGTCTTCAC 5776 Query 43172 AAAGATTTGCAT 43183 ||| |||||||| Sbjct 5777 AAAAATTTGCAT 5788 >seq14526 Length=1284 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| ||||| ||||||||||||| || ||| || | || |||| || ||||| ||||| Sbjct 972 CTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAA 1031 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||| || || ||||| || | || | | ||||| | | ||| |||| | ||| | Sbjct 1032 TATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTAT-CTTGAATTTTCGCTTTTACAT 1090 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | | || || | ||| || || | || || ||||| || ||||| ||||| | Sbjct 1091 TTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGA 1150 Query 43171 CAAAGATTTGCATT 43184 | ||||| |||||| Sbjct 1151 CGAAGATCTGCATT 1164 >seq4364 Length=12272 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| ||||| ||||||||||||| || ||| || | || |||| || ||||| ||||| Sbjct 3489 CTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAA 3548 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||| || || ||||| || | || | | ||||| | | ||| |||| | ||| | Sbjct 3549 TATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTAT-CTTGAATTTTCGCTTTTACAT 3607 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | | || || | ||| || || | || || ||||| || ||||| ||||| | Sbjct 3608 TTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGA 3667 Query 43171 CAAAGATTTGCATT 43184 | ||||| |||||| Sbjct 3668 CGAAGATCTGCATT 3681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571701721163360