Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq14526 116 6e-21 seq4364 113 7e-20 >seq14526 Length=1284 Score = 116 bits (128), Expect = 6e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||||||||| || ||||| || | ||||| ||||| |||||| ||||| || Sbjct 937 CCACCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGAC 996 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | || ||| ||||||||||| || || || || | | ||||||||| |||||| Sbjct 997 AAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGA 1056 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 1057 ATTCCTTCCTTATCTTG 1073 >seq4364 Length=12272 Score = 113 bits (124), Expect = 7e-20 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||| |||||||||| || ||||| || | ||||| ||||| |||||| ||||| | Sbjct 3452 TTCTNCCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAG 3511 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||| | || ||| ||||||||||| || || || || | | ||||||||| |||| Sbjct 3512 ACAAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAG 3571 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| |||||||| Sbjct 3572 GAATTCCTTCCTTATCTTG 3590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743375724375040