Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2 188 6e-43 seq4364 100 3e-16 seq14526 96.9 3e-15 seq1635 91.5 1e-13 seq1443 87.8 2e-12 seq1486 86.0 6e-12 >seq2 Length=118199 Score = 188 bits (208), Expect = 6e-43 Identities = 429/640 (67%), Gaps = 18/640 (3%) Strand=Plus/Minus Query 57527 GAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAA 57586 ||| ||| |||| ||||| || | || || |||| | || || ||| | | ||||| Sbjct 63779 GAACCCCAGTAGGTTTGTTGTGATGCCCATCCAATACCACGATATATGGGAGTTCTACAA 63720 Query 57587 AAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGA 57646 ||||||| || || || |||||||| || || || ||| || | || ||||| | || Sbjct 63719 GAAGGCAGTGGCTTCCTTCTGGACCGTGGAGGAGGTTGACTTGACGAAAGATCTCACTGA 63660 Query 57647 TTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGC 57706 ||||| || || || |||| | | ||||| |||||| |||| || ||||| Sbjct 63659 CTGGGAGAGACTGAATGATGGTGAGCGTCACTTTATCTCCCACGTGCTGGCTTTCTTCGC 63600 Query 57707 CGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGT 57766 || || || ||||| |||||||||||| | | || | ||||| || ||| | Sbjct 63599 AGCCAGTGACGGAATTGTGAACGAGAATTTGTGCATGAACTTCTGCCAAGAGGTTCAAAT 63540 Query 57767 GACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAAT 57826 |||| || | || || || || | ||| | || | || ||| | || || || || Sbjct 63539 TCCGGAAGCTCGTTGTTTCTATGGGATGCAAATTGCAGTAGAGAACATCCACTCGGAGAT 63480 Query 57827 GTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGA----CTGT 57882 |||||| || ||||||||||| |||||||| || || | || ||| || || | Sbjct 63479 GTATTCACTGCTCATCGATACCTACGTGAAAGA-GCCG--GCCAAGCGT-GATTTTCTCT 63424 Query 57883 TCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGA 57942 |||| ||||| || || |||| | |||||||| || ||| || | | |||| Sbjct 63423 TCAATGCGATTGAGACTCTGCCATGTGTGAAGAAGAAGGCGGATTGGGCACTGAGGTGGA 63364 Query 57943 T-----AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGA 57997 | | |||| || || |||| || ||| | | || ||||| || || || || Sbjct 63363 TCGCGAACAAAG----AC-GCGACGTATGCGGAGCGTGTTATGGCGTTTGCTGCAGTGGA 63309 Query 57998 AGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGAT 58057 || | ||||| ||||| || || | || || ||| ||||||| || ||||| || Sbjct 63308 GGGGGTTTTCTTCTCGGGTTCATTCGCCTCGATCTTCTGGTTGAAGAAGCGTGGCCTAAT 63249 Query 58058 GCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTT 58117 ||| || || || || || ||||||||||| || ||||||||||| || || ||||| Sbjct 63248 GCCGGGTCTCACCTTCAGTAACGAGTTGATTAGCCGTGACGAGGGTCTGCACACAGATTT 63189 Query 58118 TGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACG 58157 || || || || | | ||||| || || || ||| || Sbjct 63188 CGCCTGTCTGATTTTCAAGCACATCGTGAACAAGCCGTCG 63149 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 57527 GAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAA 57586 ||| ||| |||| ||||| || | || || |||| | || || ||| | | ||||| Sbjct 73282 GAACCCCAGTAGGTTTGTTGTGATGCCCATCCAATACCACGATATATGGGAGTTCTACAA 73223 Query 57587 AAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGA 57646 ||||||| || || || |||||||| || || || ||| || | || ||||| | || Sbjct 73222 GAAGGCAGTGGCTTCCTTCTGGACCGTGGAGGAGGTTGACTTGACGAAAGATCTCACTGA 73163 Query 57647 TTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGC 57706 ||||| || || || |||| | | ||||| |||||| |||| || ||||| Sbjct 73162 CTGGGAGAGACTGAATGATGGTGAGCGTCACTTTATCTCCCACGTGCTGGCTTTCTTCGC 73103 Query 57707 CGCATCCGATGGTATTGTTAACGAGAATTTG 57737 || || || ||||| |||||||||||| Sbjct 73102 AGCCAGTGACGGAATTGTGAACGAGAATTTG 73072 >seq4364 Length=12272 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || || || ||||| || || |||| ||||| ||| Sbjct 3908 ATGCAAATTTTTGTGAAGACCCTCACCGGTAAAACAATTACTCTCGAGGTTGAGCCGAGT 3849 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | || | || ||| || || ||||||||| ||| | || || || || Sbjct 3848 GACTCGATAGAGAATGTGAAAGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCAA 3789 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || ||||||||||| |||||||||||| ||| | || || || Sbjct 3788 CAACGACTCATTTTCGCTGGCAAGCAGTTGGAAGACGGACGTACTCTATCTGACTACAAT 3729 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || || ||||| ||||| ||||| || ||| |||| Sbjct 3728 ATCCAGAAGGAATCTACTCTACATCTAGTGCTTCGACT 3691 >seq14526 Length=1284 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || || || ||||| || || |||| ||||| ||| Sbjct 707 ATGCAAATTTTTGTGAAGACCCTCACCGGTAAAACAATTACTCTCGAGGTTGAGCCGAGT 648 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | || | || ||| || || ||||||||| ||| | || || || || Sbjct 647 GACTCGATAGAGAATGTGAAAGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCAA 588 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || ||||||||||| ||| |||||||| ||| | | || || || Sbjct 587 CAACGACTCATTTTCGCTGGCAAGCAGCTGGAAGACGGACGTACTCTTAATGACTACAAT 528 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || ||||| ||||| ||||| || ||| Sbjct 527 ATCCAGAAGGAATCAACTCTCCATCTAGTGCTT 495 >seq1635 Length=24574 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || || || ||||| || || |||| ||||| ||| Sbjct 15275 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACAATTACTCTCGAGGTTGAGCCGAGT 15334 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || ||||||||| ||| | || || || || Sbjct 15335 GACACGATTGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCAA 15394 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || ||||||||||||||| ||||||| ||| | || || || Sbjct 15395 CAACGACTCATTTTCGCTGGCAAACAGCTGGAAGAGGGGCGCACTCTTTCTGACTACAAT 15454 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || ||||| ||||| ||||| || ||| Sbjct 15455 ATCCAGAAGGAATCAACTCTCCATCTTGTGCTT 15487 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || || || ||||| || || |||| ||||| ||| Sbjct 5788 ATGCAAATTTTTGTGAAGACCCTCACCGGTAAAACAATAACTCTCGAGGTTGAGCCGAGT 5729 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || ||||||||| ||| | || || || || Sbjct 5728 GACACGATTGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCAA 5669 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || |||||||| || ||| |||||||| ||| | || || || Sbjct 5668 CAACGACTCATTTTCGCTGGTAAGCAGCTGGAAGACGGACGTACTCTATCTGACTACAAT 5609 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || ||||| ||||| ||||| || ||| Sbjct 5608 ATCCAGAAGGAATCTACTCTCCATCTTGTGCTT 5576 >seq1443 Length=26160 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 ||||| | ||| || | || | || || || || ||| || || || ||||| || Sbjct 12154 TTGTCAATTGTGAATTTAATCGGGTCGGCTGCAGGACGGGTTCGGAGGTAGTACATTCCA 12213 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 |||||||| ||| |||||||||| || ||||| || || || | || ||||| | || Sbjct 12214 GTCTTCAGTCCCTTCTTCCACGCATAGAAATGCATGGAAGTGATCTTACCATAGTTGGGT 12273 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 | ||||| | ||| ||||||||||||||||| || || | | ||||| || || Sbjct 12274 TCCTTCATGTGGAGATTCAACGACTGACTCTGATCTATGAAAGGAGCACGATCTGCAGCT 12333 Query 22286 ATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACA 22331 | || || | || | | || ||||| || |||||||||| Sbjct 12334 AGATCAATAATCGTTTTCTGTGGAATCTCCCAGACAGTCTTGTACA 12379 >seq1486 Length=25894 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || |||||| | || |||||||| ||||| | || |||||||| Sbjct 18282 AATATGCAGATCTTTGTTAAGACTTTAACTGGCAAAACTATCACTCTTGAAGTTGAACCT 18341 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || |||||| || || | ||| ||| |||||||| | || || || Sbjct 18342 TCAGATTCCATCGAAAATGTGAAGGCCAAAATTCAGGATAAGGAAGGTATTCCTCCAGAT 18401 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || ||| | || || |||||||||||| | ||||| ||| | || || Sbjct 18402 CAACAACGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGCCGTACTCTATCGGACTAC 18461 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || || ||||| || |||||| |||| Sbjct 18462 AACATCCAGAAGGAATCTACCCTTCATTTGGT 18493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445676065439040