Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 264 1e-65 seq1443 190 3e-43 >seq2 Length=118199 Score = 264 bits (292), Expect = 1e-65 Identities = 445/637 (70%), Gaps = 13/637 (2%) Strand=Plus/Plus Query 33567 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCG 33626 || || || |||| ||| |||||||| ||||||||||||||| | ||||| || ||| Sbjct 63168 TGCTTGAAAATCAGACAGGCGAAATCTGTGTGCAGACCCTCGTCACGGCTAATCAACTCG 63227 Query 33627 TTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33686 ||| || ||||| || ||||||||||||||||| || | ||| || || || |||||| Sbjct 63228 TTACTGAAGGTGAGACCCGGCATTAGGCCACGCTTCTTCAACCAGAAGATCGAGGCGAAT 63287 Query 33687 GATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG 33746 || || || ||||| | || || ||||||||||| || |||| | ||| |||| || Sbjct 63288 GAACCCGAGAAGAAAACCCCCTCCACTGCAGCAAACGCCATAACACGCTCCGCATA--CG 63345 Query 33747 GCGCTGTC-ATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33800 ||| ||| ||| |||||| | | |||||||| |||||||| || ||||| ||| Sbjct 63346 TCGC-GTCTTTGTTCGCGATCCACCTCAGTGCCCAATCCGCCTTCTTCTTCACACATGGC 63404 Query 33801 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33860 | || || || ||||| |||||| | | | ||||| || || |||||| Sbjct 63405 AGAGTCTCAATCGCATTGAAGAGAAAATCACGCTTGGCCGGCTCTTTCACGTAGGTATCG 63464 Query 33861 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33920 || | || |||||| ||||| || ||||| || | || || || | || |||||| Sbjct 63465 ATGAGCAGTGAATACATCTCCGAGTGGATGTTCTCTACTGCAATTTGCATCCCATAGAAA 63524 Query 33921 CATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC-TGC-TAAATTTTCATTCA 33978 || | ||| || | ||| || || ||| || || |||| ||| ||||| || |||| Sbjct 63525 CAACGAGCTTCCGGAATTTGAACCTCTTGGCAGAA--GTTCATGCACAAATTCTCGTTCA 63582 Query 33979 CTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG 34038 | ||||| ||||||||||| || || |||| || || ||||| | || | Sbjct 63583 CAATTCCGTCACTGGCTGCGAAGAAAGCCAGCACGTGGGAGATAAAGTGACGCTCACCAT 63642 Query 34039 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 34098 | ||| | | ||| ||| ||| |||||| | | || || || ||||| ||||| | Sbjct 63643 CATTCAGTCTCTCCCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGA 63702 Query 34099 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAA 34158 | || ||| ||||||| || || | | ||| || || || |||||||| || | | || Sbjct 63703 AGGAAGCCACTGCCTTCTTGTAGAACTCCCATATATCGTGGTATTGGATGGGCATCACAA 63762 Query 34159 CAAATCTATTTGGATTTGGTGCAAGGATAGGTTCCAT 34195 |||| ||| | || || || |||||| ||||| || Sbjct 63763 CAAACCTACTGGGGTTCGGCTCAAGGAGGGGTTCAAT 63799 >seq1443 Length=26160 Score = 190 bits (210), Expect = 3e-43 Identities = 416/616 (68%), Gaps = 8/616 (1%) Strand=Plus/Plus Query 63188 TTCGAACTCGTCTCCCCAAACATTGT-CCAATCTAGGACATTCATCCGGACACATCAACG 63246 ||||||||| ||||||||| || | | ||| | || ||||| | ||| ||| || | Sbjct 13565 TTCGAACTCCTCTCCCCAA-CAGTCTGCCAGACCGGGGCATTCGTGAGGATCCATGAAAG 13623 Query 63247 ACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63305 |||| |||| ||||| | || | | ||| || |||||||||||||| ||||| | Sbjct 13624 TCCACATCTCA-TCATCATGAACCCTCTGCATGAAAAGATCAGGAATCCAGAGAGCCAGG 13682 Query 63306 AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63365 || |||||||| | | | |||||| || || || | || || | |||| | Sbjct 13683 AAGAGATCTCTAGCACGAATCTCCTCGGCCCCAGTGTTTCTACGCAGCTCTATGAACTGC 13742 Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425 | | ||||| |||||| ||||| | ||||| || | | | || || || || || || Sbjct 13743 AAGACATCAGGATGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTCCCA 13802 Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485 || || || | || ||||||||| |||| || |||| || ||| |||| | || || Sbjct 13803 CCTTGGTCCACATACCTAGCGGTGCTATTGTACACTCGCAGCATGGGAACCAAGCCATTG 13862 Query 63486 GATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATA 63543 ||| ||||||||| |||| |||| | || || |||||| | | | ||| | Sbjct 13863 GATTCACCATTGGTTCCGGCGATAAAAGTGCCCTTGCTACGAATACAATGCACATT--AA 13920 Query 63544 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGC 63603 |||| | || || || | || ||||| || || ||| | || | || || ||||| | Sbjct 13921 GACCAACGCCTCCAGCGTTCTTTGAGATCAAGGCACATTGCTTGAGTGTATCGTAGATAC 13980 Query 63604 CTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAG 63663 | || || || || || |||| | || || |||||||| ||||| || || | | Sbjct 13981 CCTCGATACTGTCGTCCTTCATCGTGAGAAGGAAACAGCTCGACATCTGAGGAACTGGTG 14040 Query 63664 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63723 | |||| ||| || | || ||||| || || || ||||| |||| ||| | ||| | | Sbjct 14041 TGCCCGAATTGAAGAGAGTCGGAGAGGCCTGAGTGAACCACTTTTGAGACATTAGGTGAT 14100 Query 63724 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63783 ||||||||| || | || | ||| || || || || | | || ||||| |||| Sbjct 14101 ACGTCTCAAAGGCAGCTTCGAGATCATATCCGTGGATGCCCAAGGACACGCGCATAAACA 14160 Query 63784 TGTGCTGAGGTCTTTC 63799 | ||||| ||||| || Sbjct 14161 TATGCTGCGGTCTCTC 14176 Score = 95.1 bits (104), Expect = 2e-14 Identities = 310/472 (66%), Gaps = 15/472 (3%) Strand=Plus/Plus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 ||||| | |||||||| ||| || ||| ||| || || || || ||||||||||| Sbjct 12154 TTGTCAATTGTGAATTTAATCGGGTCGGCTGCAGGACGGGTTCGGAGGTAGTACATTCCA 12213 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 || || || || |||| | || |||||||| || | || ||| | || Sbjct 12214 GTCTTCAGTCCCTTCTTCCACGCATAGAAATGCATGGAAGTGATCTTACCATAGTTGGGT 12273 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || || |||| ||||| || ||||| ||||| ||||| | | | |||||||| Sbjct 12274 TCCTTCATGTGGAGATTCAACGACTGACTCTGATCTATGAAAGGAGCACGATCTGCAGCT 12333 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62275 | | || ||||| || |||| ||| ||||| | ||| || || ||| | ||||||||| Sbjct 12334 AGATCAATAATCGTTTTCTGTGGAATCTCCCAGACAGTCTTGTACAACGC-CTTAATATC 12392 Query 62276 TTCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTACCATAAT--CCTATTCTTG 62330 ||||||| || | | |||||| || || || | || || || || ||| Sbjct 12393 GTCTGGAATGCCGTCGATGTGCTGAATAGAACCCTGATTGGCAATTATTGCCAAT--TTG 12450 Query 62331 ATCTCATCATTCCATAATTTTC-TCTCGGTTAAAACTCTAAGGAGATGCGG--GTTAACT 62387 | | ||| ||| ||| | ||| | | |||| | | ||| || || || Sbjct 12451 AGGGCCTCAGACCA-AATGCCCAAATCGATGAGGTCTCTCA--ACATGTGGCTATTGACA 12507 Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 | ||||| |||||||| | || | || | | | |||||| ||| ||||| Sbjct 12508 ATCTGGAAATCTCCAGAAAGAACACGACGCGAAAATACATTACTCGTAATGGGTTCAGTT 12567 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62499 ||||| | ||||||| |||||||||||||||||||| ||||| ||||| Sbjct 12568 GACTCGGTGTTTCCCAGGATTTGAGCAGTTGATGCAGTGGGCATTAATGCCA 12619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629689967463360