Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2 233 3e-56 seq1443 219 6e-52 >seq2 Length=118199 Score = 233 bits (258), Expect = 3e-56 Identities = 421/608 (69%), Gaps = 13/608 (2%) Strand=Plus/Plus Query 36143 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 36202 || || || |||| ||| |||||||| ||| ||||||||||| | ||||| || ||| Sbjct 63168 TGCTTGAAAATCAGACAGGCGAAATCTGTGTGCAGACCCTCGTCACGGCTAATCAACTCG 63227 Query 36203 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 36262 || || ||||| || ||||||||||||||||| || | ||| || || || || ||| Sbjct 63228 TTACTGAAGGTGAGACCCGGCATTAGGCCACGCTTCTTCAACCAGAAGATCGAGGCGAAT 63287 Query 36263 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 36322 || || || ||||||| || || ||||| ||||| || |||| | ||| |||| || Sbjct 63288 GAACCCGAGAAGAAAACCCCCTCCACTGCAGCAAACGCCATAACACGCTCCGCATA--CG 63345 Query 36323 GCACTGTC-ATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 36376 | | ||| ||| |||||| | | |||||||| |||||||| || ||||| ||| Sbjct 63346 TCGC-GTCTTTGTTCGCGATCCACCTCAGTGCCCAATCCGCCTTCTTCTTCACACATGGC 63404 Query 36377 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 36436 | ||||| || ||||| |||||| | | | ||||| || || ||||| Sbjct 63405 AGAGTCTCAATCGCATTGAAGAGAAAATCACGCTTGGCCGGCTCTTTCACGTAGGTATCG 63464 Query 36437 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 36496 || | || |||||| ||||| || ||||| || | || ||||| | || |||||| Sbjct 63465 ATGAGCAGTGAATACATCTCCGAGTGGATGTTCTCTACTGCAATTTGCATCCCATAGAAA 63524 Query 36497 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC-TGC-TAAATTTTCATTCA 36554 || | ||| || | ||| || || ||| || || |||| ||| ||||| || |||| Sbjct 63525 CAACGAGCTTCCGGAATTTGAACCTCTTGGCAGAA--GTTCATGCACAAATTCTCGTTCA 63582 Query 36555 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTG 36614 | ||||||||||||||||| || || |||| || || ||||| | || Sbjct 63583 CAATTCCGTCACTGGCTGCGAAGAAAGCCAGCACGTGGGAGATAAAGTGACGCTCACCAT 63642 Query 36615 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 36674 | ||| | | ||| ||| ||| |||||| | | || || || ||||| ||||| | Sbjct 63643 CATTCAGTCTCTCCCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGA 63702 Query 36675 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 36734 | || ||| ||||||| || || | | ||| || || || ||||| || || | | || Sbjct 63703 AGGAAGCCACTGCCTTCTTGTAGAACTCCCATATATCGTGGTATTGGATGGGCATCACAA 63762 Query 36735 CAAATCTA 36742 |||| ||| Sbjct 63763 CAAACCTA 63770 >seq1443 Length=26160 Score = 219 bits (242), Expect = 6e-52 Identities = 427/619 (69%), Gaps = 14/619 (2%) Strand=Plus/Plus Query 65981 TTCGAACTCGTCTCCCCAAACATTGT-CCAATCCAGGACATTCATCCGGACACATCAACG 66039 ||||||||| ||||||||| || | | ||| || || ||||| | ||| ||| || | Sbjct 13565 TTCGAACTCCTCTCCCCAA-CAGTCTGCCAGACCGGGGCATTCGTGAGGATCCATGAAAG 13623 Query 66040 ACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 66098 |||| |||| ||||| | || | | ||| || |||||||||||||| ||||| | Sbjct 13624 TCCACATCTCA-TCATCATGAACCCTCTGCATGAAAAGATCAGGAATCCAGAGAGCCAGG 13682 Query 66099 AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 66158 || | |||||| | | | |||||| || || || | || || | |||| | Sbjct 13683 AAGAGATCTCTAGCACGAATCTCCTCGGCCCCAGTGTTTCTACGCAGCTCTATGAACTGC 13742 Query 66159 ATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 66218 | | |||| |||||| ||||| | ||||| || | | | || || || || || || Sbjct 13743 AAGACATCAGGATGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTCCCA 13802 Query 66219 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 66278 || || || | || ||||||||| |||| || |||| || ||| |||| | |||||| Sbjct 13803 CCTTGGTCCACATACCTAGCGGTGCTATTGTACACTCGCAGCATGGGAACCAAGCCATTG 13862 Query 66279 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGC-ACGAAT--ATTACTAATTGAT 66335 ||| ||||||||| |||| |||| | | || ||||| |||||| | | | ||| Sbjct 13863 GATTCACCATTGGTTCCGGCGATAAAAGTGCC-CTTGCTACGAATACAATGCACATT--A 13919 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 ||||| | || || || | || ||||| || || ||| | || | ||||| ||||| Sbjct 13920 AGACCAACGCCTCCAGCGTTCTTTGAGATCAAGGCACATTGCTTGAGTGTATCGTAGATA 13979 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT- 66454 ||||| ||||| || ||| |||| | || || |||||||| ||||| || || ||| Sbjct 13980 CCCTCGATACTGTCGTCCTTCATCGTGAGAAGGAAACAGCTCGACATCTGAGGA--ACTG 14037 Query 66455 -AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 66513 || |||| ||| || | || ||||| || || || ||||| |||| ||| | ||| | Sbjct 14038 GTGTGCCCGAATTGAAGAGAGTCGGAGAGGCCTGAGTGAACCACTTTTGAGACATTAGGT 14097 Query 66514 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 66573 |||||||||| || | || | ||| || || || || | | || ||||| | Sbjct 14098 GATACGTCTCAAAGGCAGCTTCGAGATCATATCCGTGGATGCCCAAGGACACGCGCATAA 14157 Query 66574 ACATGTGCTGAGGTCTTTC 66592 |||| ||||| ||||| || Sbjct 14158 ACATATGCTGCGGTCTCTC 14176 Score = 104 bits (114), Expect = 3e-17 Identities = 312/472 (66%), Gaps = 15/472 (3%) Strand=Plus/Plus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 ||||| | |||||||| ||| || ||| ||| || || || || ||||||||||| Sbjct 12154 TTGTCAATTGTGAATTTAATCGGGTCGGCTGCAGGACGGGTTCGGAGGTAGTACATTCCA 12213 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 || || || || |||| | || |||||||| || | || ||| | || Sbjct 12214 GTCTTCAGTCCCTTCTTCCACGCATAGAAATGCATGGAAGTGATCTTACCATAGTTGGGT 12273 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || || |||| ||||| || ||||| ||||| ||||| | | | |||||||| Sbjct 12274 TCCTTCATGTGGAGATTCAACGACTGACTCTGATCTATGAAAGGAGCACGATCTGCAGCT 12333 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 65068 | | || ||||| || |||||||| ||||| | ||| || || ||| | ||||||||| Sbjct 12334 AGATCAATAATCGTTTTCTGTGGAATCTCCCAGACAGTCTTGTACAACGC-CTTAATATC 12392 Query 65069 TTCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCCATAAT--CCTATTCTTG 65123 ||||||| || | | |||||| || || || || || || || || ||| Sbjct 12393 GTCTGGAATGCCGTCGATGTGCTGAATAGAACCCTGATTGGCAATTATTGCCAAT--TTG 12450 Query 65124 ATCTCATCATTCCATAATTTTC-TCTCGGTTAAAACTCTAAGGAGATGCGG--ATTAACT 65180 | | ||| ||| ||| | ||| | | |||| | | ||| || ||| || Sbjct 12451 AGGGCCTCAGACCA-AATGCCCAAATCGATGAGGTCTCTCA--ACATGTGGCTATTGACA 12507 Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 | || || |||||||| | || | || | | | |||||| ||| ||||| Sbjct 12508 ATCTGGAAATCTCCAGAAAGAACACGACGCGAAAATACATTACTCGTAATGGGTTCAGTT 12567 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 65292 ||||| | ||||||| |||||||||||||||||||| ||||| ||||| Sbjct 12568 GACTCGGTGTTTCCCAGGATTTGAGCAGTTGATGCAGTGGGCATTAATGCCA 12619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658039421282080