Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 2e-15 >seq2 Length=118199 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||| ||||| || || || || || | || || || ||||| || | || |||||| Sbjct 63327 TGGCGTTTGCTGCAGTGGAGGGGGTTTTCTTCTCGGGTTCATTCGCCTCGATCTTCTGGT 63268 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 ||||||| ||| || ||||| || | | || |||||||||||||||||||||| Sbjct 63267 TGAAGAAGCGTGGCCTAATGCCGGGTCTCACCTTCAGTAACGAGTTGATTAGCCGTGACG 63208 Query 22868 AAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGT-GT 22926 | ||||| ||| || || || ||| || | || | ||| || | ||||| |||| | Sbjct 63207 AGGGTCTGCACACAGATTTCGCCTGTCTGATTTTCAAGCACATCGTGAACAAGCCGTCGG 63148 Query 22927 CAGGACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAG 22971 | || || ||| | ||||| |||||| ||||| |||||| Sbjct 63147 CTAAGCG-TGTCCATGAGATCATGCGTGATGCTGTTGAGATTGAG 63104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356163214029436