Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 seq14526 104 2e-17 seq4364 104 2e-17 >seq2 Length=118199 Score = 107 bits (118), Expect = 2e-18 Identities = 173/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 |||| || |||| | | | || |||||| || |||| ||||||||| ||| |||| Sbjct 63423 TCAATGCGATTGAGACTCTGCCATGTGTGAAGAAGAAGGCGGATTGGGCACTGAGGTGGA 63364 Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651 ||| ||| | | || || | ||| || ||| | | ||||||||| |||||| || | Sbjct 63363 TCGCGAACAAAGACGCGACGTATGCGGAGCGTGTTATGGCGTTTGCTGCAGTGGAGGGGG 63304 Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCC 52710 | || || |||||| || || | || || | | || || | ||| | ||||||| Sbjct 63303 TTTTCTTCTCGGGTTCATTCGCCTCGATCTTCTGGTTGAAGAAGCGTGGCC-TAATGCCG 63245 Query 52711 GGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCG 52770 || ||||| || || ||||||||||| || ||||| || ||||||||||||| || Sbjct 63244 GGTCTCACCTTCAGTAACGAGTTGATTAGCCGTGACGAGGGTCTGCACACAGATTTCGCC 63185 Query 52771 TGTTTG 52776 ||| || Sbjct 63184 TGTCTG 63179 >seq14526 Length=1284 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||||| ||||||||||||||| || || ||||| || |||| || || Sbjct 954 AACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTC 1013 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | |||||||| || | || |||||||||||||| ||||| || ||||| || || | Sbjct 1014 TAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATC-TT 1072 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || |||| | ||||| | ||| | || || |||| || || |||| ||| | || | Sbjct 1073 GAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTT 1132 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || | || || ||||| || ||||| Sbjct 1133 TACCAGTTAGGGTCTTGACGAAGATCTGCAT 1163 >seq4364 Length=12272 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||||| ||||||||||||||| || || ||||| || |||| || || Sbjct 3471 AACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTC 3530 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | |||||||| || | || |||||||||||||| ||||| || ||||| || || | Sbjct 3531 TAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATC-TT 3589 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || |||| | ||||| | ||| | || || |||| || || |||| ||| | || | Sbjct 3590 GAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTT 3649 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || | || || ||||| || ||||| Sbjct 3650 TACCAGTTAGGGTCTTGACGAAGATCTGCAT 3680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495963472630400