Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 244 2e-59 seq1443 239 6e-58 >seq2 Length=118199 Score = 244 bits (270), Expect = 2e-59 Identities = 437/634 (69%), Gaps = 7/634 (1%) Strand=Plus/Plus Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004 || || || |||| ||| |||||||| ||||||||||||||| | ||||| | ||| Sbjct 63168 TGCTTGAAAATCAGACAGGCGAAATCTGTGTGCAGACCCTCGTCACGGCTAATCAACTCG 63227 Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064 || || ||||| || ||||||||||||||||| || | ||| || || || || ||| Sbjct 63228 TTACTGAAGGTGAGACCCGGCATTAGGCCACGCTTCTTCAACCAGAAGATCGAGGCGAAT 63287 Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG 50124 || || || ||||| | || || ||||| ||||| || | || | ||| |||| | Sbjct 63288 GAACCCGAGAAGAAAACCCCCTCCACTGCAGCAAACGCCATAACACGCTCCGCATACGTC 63347 Query 50125 GCG---CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 50181 ||| ||| |||||| | | |||||||| |||||||| || ||||| |||| Sbjct 63348 GCGTCTTTGTTCGCGATCCACCTCAGTGCCCAATCCGCCTTCTTCTTCACACATGGCAGA 63407 Query 50182 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 50241 || || || ||||| |||||| | | | ||||| || || |||||||| Sbjct 63408 GTCTCAATCGCATTGAAGAGAAAATCACGCTTGGCCGGCTCTTTCACGTAGGTATCGATG 63467 Query 50242 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 50301 | || |||||| ||||| || ||||| || | || || || | || |||||||| Sbjct 63468 AGCAGTGAATACATCTCCGAGTGGATGTTCTCTACTGCAATTTGCATCCCATAGAAACAA 63527 Query 50302 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA-GC-TAAATTTTCATTCACTA 50359 | ||| || | ||| || || ||| || || ||||| || ||||| || ||||| | Sbjct 63528 CGAGCTTCCGGAATTTGAACCTCTTGGCAGAA--GTTCATGCACAAATTCTCGTTCACAA 63585 Query 50360 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTG 50419 |||||||||||||||| || || |||| || || ||||| || || Sbjct 63586 TTCCGTCACTGGCTGCGAAGAAAGCCAGCACGTGGGAGATAAAGTGACGCTCACCATCAT 63645 Query 50420 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATG 50479 | ||| | | ||| ||| ||| |||||| | | || || || ||||| ||||| || | Sbjct 63646 TCAGTCTCTCCCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGAAGG 63705 Query 50480 ATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAA 50539 | ||| ||||||| || || | | ||| || || || |||||||| || | | ||||| Sbjct 63706 AAGCCACTGCCTTCTTGTAGAACTCCCATATATCGTGGTATTGGATGGGCATCACAACAA 63765 Query 50540 ATCTATTTGGATTTGGTGCAAGGATCGGTTCCAT 50573 | ||| | || || || |||||| ||||| || Sbjct 63766 ACCTACTGGGGTTCGGCTCAAGGAGGGGTTCAAT 63799 >seq1443 Length=26160 Score = 239 bits (264), Expect = 6e-58 Identities = 427/617 (69%), Gaps = 10/617 (2%) Strand=Plus/Plus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||||||||| ||||||||| || | | || || ||||||| |||| ||| || | Sbjct 13565 TTCGAACTCCTCTCCCCAACAGTCTGCCAGACCGGGGCATTCGTGAGGATCCATGAAAGT 13624 Query 79920 CCAC-TCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 79978 |||| |||| |||||| | || | | ||| || |||||||||||||| ||||| | | Sbjct 13625 CCACATCTC-ATCATCATGAACCCTCTGCATGAAAAGATCAGGAATCCAGAGAGCCAGGA 13683 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 80038 | |||||||| | | | ||||||| || || || | || || | |||| || Sbjct 13684 AGAGATCTCTAGCACGAATCTCCTCGGCCCCAGTGTTTCTACGCAGCTCTATGAACTGCA 13743 Query 80039 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTC 80098 | ||||| |||||| ||||| | ||||| || | | | || || || || || || | Sbjct 13744 AGACATCAGGATGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTCCCAC 13803 Query 80099 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 80158 | || || | || ||||||||| |||| || |||| || ||| |||| | ||||||| Sbjct 13804 CTTGGTCCACATACCTAGCGGTGCTATTGTACACTCGCAGCATGGGAACCAAGCCATTGG 13863 Query 80159 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAG 80216 || ||||||||| |||| |||| | | || || |||||| | | | ||| || Sbjct 13864 ATTCACCATTGGTTCCGGCGATAAAAGTGCCCTTGCTACGAATACAATGCACATT--AAG 13921 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 ||| | || || || | || ||||| || || ||| | || | ||||| ||||| || Sbjct 13922 ACCAACGCCTCCAGCGTTCTTTGAGATCAAGGCACATTGCTTGAGTGTATCGTAGATACC 13981 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT--A 80334 ||| || || || || |||| | || || |||||||| ||||| || || ||| Sbjct 13982 CTCGATACTGTCGTCCTTCATCGTGAGAAGGAAACAGCTCGACATCTGAGGA--ACTGGT 14039 Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || |||| ||| || | || ||||| || || || ||||| |||| ||||| ||| | Sbjct 14040 GTGCCCGAATTGAAGAGAGTCGGAGAGGCCTGAGTGAACCACTTTTGAGACATTAGGTGA 14099 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 |||||||||| || | ||| | ||| || || || || | | || ||||| ||| Sbjct 14100 TACGTCTCAAAGGCAGCTTCGAGATCATATCCGTGGATGCCCAAGGACACGCGCATAAAC 14159 Query 80455 ATGTGCTGAGGTCTTTC 80471 || ||||| ||||| || Sbjct 14160 ATATGCTGCGGTCTCTC 14176 Score = 98.7 bits (108), Expect = 1e-15 Identities = 311/472 (66%), Gaps = 15/472 (3%) Strand=Plus/Plus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 ||||| | |||||||| ||| || ||| ||| || || || || ||||||||||| Sbjct 12154 TTGTCAATTGTGAATTTAATCGGGTCGGCTGCAGGACGGGTTCGGAGGTAGTACATTCCA 12213 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 || || || || |||| | ||||||||||| || | || ||| | || Sbjct 12214 GTCTTCAGTCCCTTCTTCCACGCATAGAAATGCATGGAAGTGATCTTACCATAGTTGGGT 12273 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || || |||| ||||| || ||||| ||||| ||||| | | | |||||||| Sbjct 12274 TCCTTCATGTGGAGATTCAACGACTGACTCTGATCTATGAAAGGAGCACGATCTGCAGCT 12333 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 78947 | | || ||||| || |||||||| ||||| | ||| || || ||| | ||||||||| Sbjct 12334 AGATCAATAATCGTTTTCTGTGGAATCTCCCAGACAGTCTTGTACAACGC-CTTAATATC 12392 Query 78948 TTCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCCATAAT--CCTATTCTTG 79002 ||||||| || | | |||||| || || || || || || || || ||| Sbjct 12393 GTCTGGAATGCCGTCGATGTGCTGAATAGAACCCTGATTGGCAATTATTGCCAAT--TTG 12450 Query 79003 ATCTCTTCATTCCATAATTTTC-TCTCGGTTAAAACTCTAAGGAGATGCGG--ATTAACT 79059 | | ||| ||| ||| | ||| | | |||| | | ||| || ||| || Sbjct 12451 AGGGCCTCAGACCA-AATGCCCAAATCGATGAGGTCTCTCA--ACATGTGGCTATTGACA 12507 Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 | || || |||||||| | || | || | | | |||||| ||| ||||| Sbjct 12508 ATCTGGAAATCTCCAGAAAGAACACGACGCGAAAATACATTACTCGTAATGGGTTCAGTT 12567 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCA 79171 || || | ||||||| ||||||||||||||||| || ||||| ||||| Sbjct 12568 GACTCGGTGTTTCCCAGGATTTGAGCAGTTGATGCAGTGGGCATTAATGCCA 12619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718123242827680