Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2 105 6e-18 >seq2 Length=118199 Score = 105 bits (116), Expect = 6e-18 Identities = 370/575 (64%), Gaps = 6/575 (1%) Strand=Plus/Plus Query 13857 TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCG 13916 || || ||||| | ||| || ||||| || || ||||| || | ||||| | ||| Sbjct 63168 TGCTTGAAAATCAGACAGGCGAAATCTGTGTGCAGACCCTCGTCACGGCTAATCAACTCG 63227 Query 13917 TTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAAT 13976 || || || | || ||||| | || || || || ||||| || || | || ||| Sbjct 63228 TTACTGAAGGTGAGACCCGGCATTAGGCCACGCTTCTTCAACCAGAAGATCGAGGCGAAT 63287 Query 13977 GACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGAT 14036 || || || ||||| | ||||| |||||||||||||| || | || || || ||| Sbjct 63288 GAACCCGAGAAGAAAACCCCCTCCACTGCAGCAAACGCCATAACACGCTCCGCATACGTC 63347 Query 14037 GCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATT 14096 || | |||||||| ||||| | ||||| || | || || || | | | || Sbjct 63348 GCGTCTTTGTTCGCGATCCACCTCAGTGCCCAATCCGCCTTCTTCTTCACACATGGCAGA 63407 Query 14097 GTTTCAATAGCATTAAATAAATATTC---CTTCTCTTTAGTACTTGAAATGTATGTATCA 14153 || ||||| ||||| || | | | || ||| | | ||| | ||| ||||| Sbjct 63408 GTCTCAATCGCATTGAAGAGAAAATCACGCTTGGC--CGGCTCTT-TCACGTAGGTATCG 63464 Query 14154 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAG 14213 || || | |||||| || ||||| ||||| || | || || || | ||||| || Sbjct 63465 ATGAGCAGTGAATACATCTCCGAGTGGATGTTCTCTACTGCAATTTGCATCCCATAGAAA 63524 Query 14214 CATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACT 14273 || | |||||||| ||| || || | | || | | |||||| || || || Sbjct 63525 CAACGAGCTTCCGGAATTTGAACCTCTTGGCAGAAGTTCATGCACAAATTCTCGTTCACA 63584 Query 14274 ATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG 14333 || || ||||| ||||| || || |||| | || ||||||| |||| ||| Sbjct 63585 ATTCCGTCACTGGCTGCGAAGAAAGCCAGCACGTGGGAGATAAAGTGACGCTCACCATCA 63644 Query 14334 TTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14393 || ||| | | ||| || | | ||| || | | || || || || || ||||| || Sbjct 63645 TTCAGTCTCTCCCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGAAG 63704 Query 14394 CTAGCGACAGCTTTTTTATACATTACCCATATTTC 14428 ||| || || || || || | ||||||| || Sbjct 63705 GAAGCCACTGCCTTCTTGTAGAACTCCCATATATC 63739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479630783120800