Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 >seq2 Length=118199 Score = 113 bits (124), Expect = 4e-20 Identities = 374/576 (65%), Gaps = 8/576 (1%) Strand=Plus/Plus Query 13645 TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCG 13704 || || ||||| | ||| || ||||| || || ||||| || | ||||| | ||| Sbjct 63168 TGCTTGAAAATCAGACAGGCGAAATCTGTGTGCAGACCCTCGTCACGGCTAATCAACTCG 63227 Query 13705 TTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAAT 13764 || || || | || ||||| | || || || || ||||| || || | |||||| Sbjct 63228 TTACTGAAGGTGAGACCCGGCATTAGGCCACGCTTCTTCAACCAGAAGATCGAGGCGAAT 63287 Query 13765 GATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGAT 13824 || || || ||||| | ||||| |||||||||||||| || | || || || ||| Sbjct 63288 GAACCCGAGAAGAAAACCCCCTCCACTGCAGCAAACGCCATAACACGCTCCGCATACGTC 63347 Query 13825 GCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATT 13884 || | |||||| | ||||| | ||||| || | || || || | | | || Sbjct 63348 GCGTCTTTGTTCGCGATCCACCTCAGTGCCCAATCCGCCTTCTTCTTCACACATGGCAGA 63407 Query 13885 GTTTCGATTGCATTGAA---TAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCA 13941 || || || |||||||| |||| ||| | | ||| | ||| ||||| Sbjct 63408 GTCTCAATCGCATTGAAGAGAAAATCACGCTTGGC--CGGCTCTT-TCACGTAGGTATCG 63464 Query 13942 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAA 14001 || || | |||||| || ||||| ||||| |||| || || || | ||||| ||| Sbjct 63465 ATGAGCAGTGAATACATCTCCGAGTGGATGTTCTCTACTGCAATTTGCATCCCATAGAAA 63524 Query 14002 CATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGC-CAAGTTTTCATTAAC 14060 || | |||||| | ||| ||||| | | || || ||| ||| || || || || Sbjct 63525 CAACGAGCTTCCGGAATTTGAACCTCTTGGCAGAA-GTTCATGCACAAATTCTCGTTCAC 63583 Query 14061 AATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT 14120 ||| || ||||| ||||| || || |||| | || ||||||| |||| ||| Sbjct 63584 AATTCCGTCACTGGCTGCGAAGAAAGCCAGCACGTGGGAGATAAAGTGACGCTCACCATC 63643 Query 14121 GTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 || ||| | | ||| || | | ||| || | | || || || || || ||||| || Sbjct 63644 ATTCAGTCTCTCCCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGAA 63703 Query 14181 ACTAGCGACAGCTTTTTTATACATTACCCATATTTC 14216 ||| || || || || || | ||||||| || Sbjct 63704 GGAAGCCACTGCCTTCTTGTAGAACTCCCATATATC 63739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478491813979680