Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq4364 100 2e-16 seq1635 98.7 8e-16 seq14526 86.0 5e-12 seq2742 84.2 2e-11 >seq4364 Length=12272 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| | ||| | ||| | ||| ||||| || | |||||| || || Sbjct 3682 CCACCACGAAGTCGAAGCACTAGATGTAGAGTAGATTCCTTCTGGATATTGTAGTCAGAT 3741 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| ||||| || ||||| || ||||| | ||| |||||||| | || Sbjct 3742 AGAGTACGTCCGTCTTCCAACTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGG 3801 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| || | |||| || | | | | ||| | | ||| || Sbjct 3802 ATGCCCTCCTTGTC-CTGAATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCAAC 3860 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| ||||| || || |||||||||||||||||| Sbjct 3861 CTCGAGAGTAATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCATT 3909 Score = 95.1 bits (104), Expect = 9e-15 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | ||||| || || | || ||| | || |||||||| ||||||||||| Sbjct 3945 CTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCTTCCAATTGCTTGCCGGCAAA 4004 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||||| || ||||| || | || | || || || || ||| |||| || | Sbjct 4005 AATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTTATCTTGAATCTTGGCTTTTACATT 4064 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||| || | || || || || | ||||||||| || || || |||||||| || Sbjct 4065 CTCAATTGTATCACTAGGTTCCACTTCGAGCGTTATAGTCTTCCCAGTAAGAGTTTTTAC 4124 Query 43098 AAAAATTTGCATTTT 43112 ||||| ||||| || Sbjct 4125 GAAAATCTGCATGTT 4139 >seq1635 Length=24574 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||| | ||||| ||| ||||| || | |||||| || || Sbjct 5562 CCACCACGAAGACGAAGCACAAGATGGAGAGTAGATTCCTTCTGGATATTGTAGTCAGAT 5621 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| |||| || || || || ||||| | ||| |||||||| | || Sbjct 5622 AGAGTACGTCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGTCGTTGTTGATCTGGGGGG 5681 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| || | | || || | ||| ||||| | | ||| || Sbjct 5682 ATGCCCTCCTTGTC-CTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAAC 5740 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||| ||||| ||||| || || ||||||||||||||||| Sbjct 5741 CTCGAGAGTTATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 5788 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||| | ||||| ||| ||||| || | |||||| || || | || || | || || Sbjct 15484 CACAAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGCCCCTCTTC 15425 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 || |||||||| || ||||| | ||| |||||||| | || | || || || || || Sbjct 15424 CAGCTGTTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTC-CT 15366 Query 43020 GA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTT 43078 || || | | || || | ||| ||||| | | ||| || || | || || |||| Sbjct 15365 GAATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAACCTCGAGAGTAATTGTTT 15306 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || ||||||||||||||||| Sbjct 15305 TTCCAGTGAGGGTCTTCACAAAAATTTGCAT 15275 >seq14526 Length=1284 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||| | ||||| ||| ||||| || | |||||| || Sbjct 481 CCACCACGAAGACGAAGCACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCATTA 540 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| |||| || ||||| || ||||| | ||| |||||||| | || Sbjct 541 AGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGG 600 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| || | |||| || | | | | ||| | | ||| || Sbjct 601 ATGCCCTCCTTGTC-CTGAATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCAAC 659 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| ||||| || || |||||||||||||||||| Sbjct 660 CTCGAGAGTAATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCATT 708 >seq2742 Length=17911 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 42897 TAACACCAA-ATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGT-ACGTTCG 42954 ||| | ||| ||| ||||| ||||| || |||||||| || || ||||| | || | Sbjct 11068 TAAGAGCAAGATGAATAGTCGATTCCTTCTGGACATTGTATTCAGA-AATGTTATGTCCA 11126 Query 42955 TCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTT 43014 || ||||| |||| || ||||||| | ||| ||||||| | ||| | || ||||| Sbjct 11127 TCTTCCAACTGTTGACCAGCAAAAACGAGTCGTTGTTGATTTGGCGGGATGCCCTCTTTA 11186 Query 43015 TCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATA 43074 | ||| | | || || || | || || || || ||| |||| | ||||| Sbjct 11187 GCTTGAATCTTCGCCTTCACGCTTTCTACCGTTTCACCCAGCTCAACGTTAAGTGTTATT 11246 Query 43075 GTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || ||||| ||||| |||| |||||||||||||| Sbjct 11247 GTGTTTCCACTTAGATTTTTGACAAAAATTTGCAT 11281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381294247564296