Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1443 255 8e-63 seq2 223 5e-53 >seq1443 Length=26160 Score = 255 bits (282), Expect = 8e-63 Identities = 433/618 (70%), Gaps = 12/618 (2%) Strand=Plus/Plus Query 71943 TTCGAACTCGTCTCCCCAAGCATTGT-CTAATCCAGGACATTCATTCGGACACATCAATG 72001 ||||||||| ||||||||| || | | | | || || ||||| | ||| ||| || | Sbjct 13565 TTCGAACTCCTCTCCCCAA-CAGTCTGCCAGACCGGGGCATTCGTGAGGATCCATGAAAG 13623 Query 72002 ACCAC-TCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 72060 |||| |||| |||||||| || | | ||| || |||||||||||||| ||||| | Sbjct 13624 TCCACATCTC-ATCATCATGAACCCTCTGCATGAAAAGATCAGGAATCCAGAGAGCCAGG 13682 Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120 || |||||||| | | | ||||||| || || || | || || | |||| | Sbjct 13683 AAGAGATCTCTAGCACGAATCTCCTCGGCCCCAGTGTTTCTACGCAGCTCTATGAACTGC 13742 Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180 | | ||||| |||||| ||||| | ||||| || | | | || || || || || || Sbjct 13743 AAGACATCAGGATGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTCCCA 13802 Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240 || || || | || ||||||||| |||| || |||| || ||| |||| | |||||| Sbjct 13803 CCTTGGTCCACATACCTAGCGGTGCTATTGTACACTCGCAGCATGGGAACCAAGCCATTG 13862 Query 72241 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATA 72298 ||| |||||||||| |||| |||| | | || || |||||| | ||| ||| | Sbjct 13863 GATTCACCATTGGTTCCGGCGATAAAAGTGCCCTTGCTACGAATACAATGCACATT--AA 13920 Query 72299 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 72358 |||| | || || || | || ||||| || || ||| | || | ||||| ||||| | Sbjct 13921 GACCAACGCCTCCAGCGTTCTTTGAGATCAAGGCACATTGCTTGAGTGTATCGTAGATAC 13980 Query 72359 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT-- 72416 |||| ||||| || ||| |||| | || || |||||||| ||||| || || ||| Sbjct 13981 CCTCGATACTGTCGTCCTTCATCGTGAGAAGGAAACAGCTCGACATCTGAGGA--ACTGG 14038 Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 || |||| ||| || | || ||||| || || || ||||| |||| ||||| ||| | Sbjct 14039 TGTGCCCGAATTGAAGAGAGTCGGAGAGGCCTGAGTGAACCACTTTTGAGACATTAGGTG 14098 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 |||||||||| || | ||| | ||| || || || || | | || ||||| || Sbjct 14099 ATACGTCTCAAAGGCAGCTTCGAGATCATATCCGTGGATGCCCAAGGACACGCGCATAAA 14158 Query 72537 CATATGCTGAGGTCTTTC 72554 ||||||||| ||||| || Sbjct 14159 CATATGCTGCGGTCTCTC 14176 >seq2 Length=118199 Score = 223 bits (246), Expect = 5e-53 Identities = 436/637 (68%), Gaps = 13/637 (2%) Strand=Plus/Plus Query 42050 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCG 42109 || || || |||| ||| |||||||| |||||||||||| || | ||||| || ||| Sbjct 63168 TGCTTGAAAATCAGACAGGCGAAATCTGTGTGCAGACCCTCGTCACGGCTAATCAACTCG 63227 Query 42110 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAAT 42169 || || ||||| || ||||||||||||||||| || | ||| || || || || ||| Sbjct 63228 TTACTGAAGGTGAGACCCGGCATTAGGCCACGCTTCTTCAACCAGAAGATCGAGGCGAAT 63287 Query 42170 GATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 42229 || || || ||||| | || || ||||| ||||| || |||| | ||| |||| || Sbjct 63288 GAACCCGAGAAGAAAACCCCCTCCACTGCAGCAAACGCCATAACACGCTCCGCATA--CG 63345 Query 42230 GCACTGTC-ATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 42283 | | ||| ||| |||||| | | |||||||| |||||||| || ||||| ||| Sbjct 63346 TCGC-GTCTTTGTTCGCGATCCACCTCAGTGCCCAATCCGCCTTCTTCTTCACACATGGC 63404 Query 42284 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCG 42343 | || || || ||||| |||||| | | | ||||| || || |||||| Sbjct 63405 AGAGTCTCAATCGCATTGAAGAGAAAATCACGCTTGGCCGGCTCTTTCACGTAGGTATCG 63464 Query 42344 ATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 42403 || | || |||||| || || || ||||| || | || || || | || |||||| Sbjct 63465 ATGAGCAGTGAATACATCTCCGAGTGGATGTTCTCTACTGCAATTTGCATCCCATAGAAA 63524 Query 42404 CATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA-GC-TAAATTTTCGTTCA 42461 || | || || | || || || ||| || || ||||| || ||||| ||||||| Sbjct 63525 CAACGAGCTTCCGGAATTTGAACCTCTTGGCAGAA--GTTCATGCACAAATTCTCGTTCA 63582 Query 42462 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCG 42521 | ||||||||||||||||| || || |||| || || ||||| | || | Sbjct 63583 CAATTCCGTCACTGGCTGCGAAGAAAGCCAGCACGTGGGAGATAAAGTGACGCTCACCAT 63642 Query 42522 GTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAA 42581 | | | | | ||| ||| ||| |||||| | | || || || || || ||||| | Sbjct 63643 CATTCAGTCTCTCCCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGA 63702 Query 42582 ATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAA 42641 | || || ||||||| || || | | ||| ||||| || ||||| || || | | || Sbjct 63703 AGGAAGCCACTGCCTTCTTGTAGAACTCCCATATATCGTGGTATTGGATGGGCATCACAA 63762 Query 42642 CAAATCTATTTGGATTTGGTGCAAGGATCGGTTCCAT 42678 |||| ||| | || || || |||||| ||||| || Sbjct 63763 CAAACCTACTGGGGTTCGGCTCAAGGAGGGGTTCAAT 63799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671003193641120