Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq14526 129 4e-25 seq4364 123 2e-23 seq1486 123 2e-23 >seq14526 Length=1284 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | || || ||| || ||||| || || ||||||||||| |||||||| Sbjct 937 CCACCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGAC 996 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | || ||||||||||| || ||| |||| | |||||| || || ||| Sbjct 997 AAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGA 1056 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| || || |||||| ||| |||||| |||| || | ||| || ||| || Sbjct 1057 ATTCCTTCCTTATCTTGAATTTTCGCT-TTTACATTTTCAATTGAATCACTGGGTTCAAC 1115 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | |||||| |||||||| || || || || || || || ||||| Sbjct 1116 TTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCAT 1163 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||| ||| || || || || || || || ||||| || | ||| | | ||||||| Sbjct 499 ACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCATTAAGAGTACGTCCGTCTTCC 558 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||||||| | || | |||||||| || || || || || ||||| | Sbjct 559 AGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGA 618 Query 15275 ATTTTGCTCTTT-ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || | |||| ||| | ||||| | || || || || || | ||||| ||||| Sbjct 619 ATCTT-CGCTTTCACATTCTCTATCGAGTCACTCGGCTCAACCTCGAGAGTAATTGTTTT 677 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || || || |||||||||||||| Sbjct 678 ACCGGTGAGGGTCTTCACAAAAATTTGCAT 707 >seq4364 Length=12272 Score = 123 bits (136), Expect = 2e-23 Identities = 164/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 15140 CCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGA 15199 ||||| | || || ||| || ||||| || || ||||||||||| |||||||| | | Sbjct 3457 CCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAA 3516 Query 15200 ATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATT 15259 | | | || ||||||||||| || ||| |||| | |||||| || || |||||| Sbjct 3517 GTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATT 3576 Query 15260 CCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATC 15318 ||||| || || |||||| ||| |||||| |||| || | ||| || ||| || || Sbjct 3577 CCTTCCTTATCTTGAATTTTCGCT-TTTACATTTTCAATTGAATCACTGGGTTCAACTTC 3635 Query 15319 TAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | |||||| |||||||| || || || || || || || ||||| Sbjct 3636 AAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCAT 3680 Score = 107 bits (118), Expect = 1e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| | || | |||||| || ||||| |||||||| || ||| | | | ||| Sbjct 3925 AAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCT 3984 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| ||||| || | |||| | ||||||||| ||| ||||| || || || Sbjct 3985 TCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTTATCT 4044 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| |||||| | || || ||||| ||| ||| || || | || || || Sbjct 4045 TGAATCTTGGCTTTTACATTCTCAATTGTATCACTAGGTTCCACTTCGAGCGTTATAGTC 4104 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 || || || ||||||||||| ||||| ||||| ||| |||| Sbjct 4105 TTCCCAGTAAGAGTTTTTACGAAAATCTGCATGTTTAGAAAT 4146 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || ||||| || ||||| || || | | | ||||| | || Sbjct 7031 ATGTAGGGTGGATTCCTTTTGGATATTGTAGTCCGAGAGGGTACGACCATCTTCAAGCTG 6972 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||| | || | ||| |||||||| ||||| ||||| ||||| ||| || Sbjct 6971 CTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTT 6912 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| | ||||||||||| || || || || | |||||||||||||| || Sbjct 6911 AGCCTTAACATTCTCTATGGTATCACTGGGCTCGACTTCAAGTGTAATGGTTTTACCAGT 6852 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || |||||||| ||||| Sbjct 6851 GAGAGTCTTCACAAAAATCTGCAT 6828 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||| ||| || || || || || || || ||||| || |||| | | ||||||| Sbjct 3700 ACTAGATGTAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCGTCTTCC 3759 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || ||||||||| | || | |||||||| || || || || || ||||| | Sbjct 3760 AACTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGA 3819 Query 15275 ATTTTGCTCTTT-ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || | |||| ||| | ||||| | || || || || || | ||||| ||||| Sbjct 3820 ATCTT-CGCTTTCACATTCTCTATCGAGTCACTCGGCTCAACCTCGAGAGTAATTGTTTT 3878 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || || || |||||||||||||| Sbjct 3879 ACCGGTGAGGGTCTTCACAAAAATTTGCAT 3908 >seq1486 Length=25894 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 ||| || ||||||||||| || || || || |||||||| || |||| | | | || Sbjct 18497 TAACACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGATAGAGTACGGCCATC 18438 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||||| ||||||||||| | |||||||||||||| || ||||| ||||| || || Sbjct 18437 TTCTAGCTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTATC 18378 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||||||| ||| ||| |||| |||| ||| | ||| || || | || || || Sbjct 18377 CTGAATTTTGGCCTTCACATTTTCGATGGAATCTGAAGGTTCAACTTCAAGAGTGATAGT 18318 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||| || || | ||| || ||||| || |||||||| Sbjct 18317 TTTGCCAGTTAAAGTCTTAACAAAGATCTGCATATT 18282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362107639275492