Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq14526 91.5 1e-13 seq4364 91.5 1e-13 >seq14526 Length=1284 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||||||| ||||| ||||||||||| | || || | | ||||| Sbjct 955 ACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTCT 1014 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | |||||||| || | ||||| | |||||||| || | || || || || | Sbjct 1015 AATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGA 1074 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 |||||| |||||| | | | | ||| | || || ||| | |||||| |||||| Sbjct 1075 ATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTTA 1134 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || |||| || ||||| || || |||||| Sbjct 1135 CCAGTTAGGGTCTTGACGAAGATCTGCATT 1164 >seq4364 Length=12272 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||||||| ||||| ||||||||||| | || || | | ||||| Sbjct 3472 ACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTCT 3531 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | |||||||| || | ||||| | |||||||| || | || || || || | Sbjct 3532 AATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGA 3591 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 |||||| |||||| | | | | ||| | || || ||| | |||||| |||||| Sbjct 3592 ATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTTA 3651 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || |||| || ||||| || || |||||| Sbjct 3652 CCAGTTAGGGTCTTGACGAAGATCTGCATT 3681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414490887151528