Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq14526 114 8e-21 seq4364 111 1e-19 seq1635 86.0 4e-12 >seq14526 Length=1284 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | || | ||||| || | || |||||||||||||||||||||||||| Sbjct 936 ACCACCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGA 995 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 |||| || | || || ||||| || || ||||| | ||||||||| || | || Sbjct 996 CAAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGG 1055 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || ||| | |||||| ||| ||| | || |||||| ||| Sbjct 1056 AATTCCTTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAAC 1115 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || ||||| || || || || || ||||| || ||||| Sbjct 1116 TTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCAT 1163 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| || | || || || ||||| ||||| || ||||| ||||| | | || || Sbjct 721 CGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCA 780 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||||||||| || ||| || | | ||| ||||| | || || || || || Sbjct 781 TCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTTA 840 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| |||||| | | |||||| || | |||| || || || ||||| Sbjct 841 TCTTGAATCTTGGCTTTTACATTCTCAATCGTATCACTAGGTTCCACTTCAAGTGTTATA 900 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || |||||||| ||||||||||| ||||| Sbjct 901 GTCTTCCCAGTAAGAGTCTTTACGAAAATCTGCAT 935 >seq4364 Length=12272 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || |||||||||||||||||||||||||||||| || | || || Sbjct 3472 ACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTCT 3531 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| || || ||||| | ||||||||| || | || || ||||| || || | Sbjct 3532 AATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGA 3591 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || | |||||| ||| ||| | || |||||| ||| || || || || ||||| Sbjct 3592 ATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTTA 3651 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || ||||| || ||||| Sbjct 3652 CCAGTTAGGGTCTTGACGAAGATCTGCAT 3680 Score = 109 bits (120), Expect = 4e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| || | || || || ||||| ||||| || ||||| ||||| | | || || Sbjct 3922 CGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCA 3981 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||||||||| || ||| || | | ||| ||||| | || || || || || Sbjct 3982 TCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTTA 4041 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| |||||| | | ||| || || | |||| || || || ||||| Sbjct 4042 TCTTGAATCTTGGCTTTTACATTCTCAATTGTATCACTAGGTTCCACTTCGAGCGTTATA 4101 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTA 33374 || || || |||||||||||||||||||| |||||||||| Sbjct 4102 GTCTTCCCAGTAAGAGTTTTTACGAAAATCTGCATGTTTA 4141 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||| | ||| | || || || || || |||||||| ||||| | | | || ||| || Sbjct 3699 CACTAGATGTAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCGTCTTC 3758 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||| ||||| ||| || || | ||||| || || | ||| ||||| || || || Sbjct 3759 CAACTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTG 3818 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 |||| | ||| || | | |||| ||| | || | ||| || ||||| || ||||| Sbjct 3819 AATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCAACCTCGAGAGTAATTGTTTT 3878 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || ||||||||||| Sbjct 3879 ACCGGTGAGGGTCTTCACAAAAATTTGCAT 3908 >seq1635 Length=24574 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||| | ||| | || || || || || |||||||| ||||| | | | || ||| || Sbjct 5579 CACAAGATGGAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCGTCTTC 5638 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 || ||||| ||| || || | ||||| || || | ||| ||||| || || || Sbjct 5639 CAGCTGCTTACCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTG 5698 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 |||| | || || | | ||||||||| | || | ||| || |||||||| ||||| Sbjct 5699 AATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAACCTCGAGAGTTATTGTTTT 5758 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || ||||||||||| Sbjct 5759 ACCGGTGAGGGTCTTCACAAAAATTTGCAT 5788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318714614726376