Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1486 82.4 5e-11 >seq1486 Length=25894 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 |||||||||||| || || || || || || || || || || ||| |||| Sbjct 18497 TAACACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGATAGAGTACGGCCATC 18438 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || | ||||| || ||||| ||||| ||||| || || |||| | |||||| ||||| Sbjct 18437 TTCTAGCTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTATC 18378 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 |||||| || || | | | | ||||| || || || || | || || || Sbjct 18377 CTGAATTTTGGCCTTCACATTTTCGATGGAATCTGAAGGTTCAACTTCAAGAGTGATAGT 18318 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| || ||||||||||| ||||| || ||||| Sbjct 18317 TTTGCCAGTTAAAGTCTTAACAAAGATCTGCAT 18285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354707501711376