Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4364 176 1e-38 seq14526 174 4e-38 seq1486 158 3e-33 seq1635 154 3e-32 seq2 118 2e-21 >seq4364 Length=12272 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || || ||||| || || || || || || || |||||||| ||||| | || ||||| Sbjct 3928 ACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCTTCC 3987 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | ||| || || |||||||| || || ||||| || || || ||||| || ||||| ||| Sbjct 3988 AATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTTATCTTGA 4047 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| ||||||||||| || | ||||| |||||||| || || || || |||||||| Sbjct 4048 ATCTTGGCTTTTACATTCTCAATTGTATCACTAGGTTCCACTTCGAGCGTTATAGTCTTC 4107 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||||||| |||||||| || |||||||| || Sbjct 4108 CCAGTAAGAGTTTTTACGAAAATCTGCATGTT 4139 Score = 174 bits (192), Expect = 4e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| |||||||||| |||||||| ||||| ||||| |||||| Sbjct 3679 ATTCCACCACGAAGTCGAAGCACTAGATGTAGAGTAGATTCCTTCTGGATATTGTAGTCA 3738 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||||||| | |||||||| | || || ||||| ||||| || | |||||||| || Sbjct 3739 GATAGAGTACGTCCGTCTTCCAACTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGG 3798 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| ||||| ||||| |||| | || || || || Sbjct 3799 GGGATGCCCTCCTTGTCCTGAATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCA 3858 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || ||||| || ||||| || || || || ||||| || |||||| Sbjct 3859 ACCTCGAGAGTAATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCATT 3909 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 |||| ||||| || | || || | || | ||||| ||||| || ||||| || ||| Sbjct 3451 ATTCTNCCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCA 3510 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||| | || || |||| |||||| || || || || || | || ||||| ||| Sbjct 3511 GACAAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGA 3570 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| ||||| ||||| || |||||||||||||| | | ||| || ||||| Sbjct 3571 GGAATTCCTTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCA 3630 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || |||||||| |||||||| || || || || || ||||||||| Sbjct 3631 ACTTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCATT 3681 Score = 111 bits (122), Expect = 4e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| |||||||| | || ||||| ||||| ||||| |||||| ||||| | ||||| Sbjct 3313 AAGCACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCATTAAGAGTACGTCCGTC 3372 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || || ||||| ||||| || | |||||||| || || || || || || || Sbjct 3373 TTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTC 3432 Query 104467 CTGAATCTTTGCTTTTACATT 104487 ||||||||| ||||| ||||| Sbjct 3433 CTGAATCTTCGCTTTCACATT 3453 >seq14526 Length=1284 Score = 174 bits (192), Expect = 4e-38 Identities = 164/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || || ||||| || || || || || || || |||||||| ||||| | || ||||| Sbjct 727 ACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCTTCC 786 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | ||| || || |||||||| || || ||||| || || || ||||| || ||||| ||| Sbjct 787 AATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTTATCTTGA 846 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| ||||||||||| || | ||||| |||||||| || || ||||| |||||||| Sbjct 847 ATCTTGGCTTTTACATTCTCAATCGTATCACTAGGTTCCACTTCAAGTGTTATAGTCTTC 906 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || ||||| || |||||||| Sbjct 907 CCAGTAAGAGTCTTTACGAAAATCTGCAT 935 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || | || | ||||| ||||| || ||||| || ||| Sbjct 934 ATACCACCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCA 993 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||| | || || |||| |||||| || || || || || | || ||||| ||| Sbjct 994 GACAAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGA 1053 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| ||||| ||||| || |||||||||||||| | | ||| || ||||| Sbjct 1054 GGAATTCCTTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCA 1113 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || |||||||| |||||||| || || || || || ||||||||| Sbjct 1114 ACTTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCATT 1164 Score = 152 bits (168), Expect = 1e-31 Identities = 162/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| |||||||| | || ||||| ||||| ||||| |||||| ||||| | ||||| Sbjct 495 AAGCACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCATTAAGAGTACGTCCGTC 554 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || || ||||| ||||| || | |||||||| || || || || || || || Sbjct 555 TTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTC 614 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| ||||| ||||| |||| | || || || || ||||| || ||||| || Sbjct 615 CTGAATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCAACCTCGAGAGTAATTGT 674 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || || || ||||| || |||||| Sbjct 675 TTTACCGGTGAGGGTCTTCACAAAAATTTGCATT 708 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| |||||||||| |||||||| ||||| ||||| |||||| Sbjct 1162 ATTCCACCACGAAGTCGAAGCACTAGATGTAGAGTAGATTCCTTCTGGATATTGTAGTCA 1221 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||||||| | |||||||| | || || ||||| ||||| || | |||||||| || Sbjct 1222 GATAGAGTACGTCCGTCTTCCAACTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGG 1281 Query 104450 GG 104451 || Sbjct 1282 GG 1283 >seq1486 Length=25894 Score = 158 bits (174), Expect = 3e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| ||||| || || ||||| |||||||| | || |||||||| ||||| ||| Sbjct 18481 GTAGATTCCTTCTGGATGTTGTAGTCCGATAGAGTACGGCCATCTTCTAGCTGTTTGCCA 18422 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | |||||||| ||||| || ||||| ||||||||||| || || || Sbjct 18421 GCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTATCCTGAATTTTGGCCTTC 18362 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || ||| |||||| || || || || ||||| || ||||| | || Sbjct 18361 ACATTTTCGATGGAATCTGAAGGTTCAACTTCAAGAGTGATAGTTTTGCCAGTTAAAGTC 18302 Query 104543 TTTACAAATATCTGCATTTT 104562 || ||||| |||||||| || Sbjct 18301 TTAACAAAGATCTGCATATT 18282 >seq1635 Length=24574 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | |||||||| ||||| ||||| |||||||||||||| | ||||| Sbjct 5576 AAGCACAAGATGGAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCGTC 5635 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || || ||||| ||||| || | |||||||| || || || || || || || Sbjct 5636 TTCCAGCTGCTTACCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTC 5695 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || ||||| || | || || || || || ||||| || || || || Sbjct 5696 CTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAACCTCGAGAGTTATTGT 5755 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || ||||| || ||||| Sbjct 5756 TTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 5788 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || ||||| ||||| ||||| |||||||| ||||| | || || Sbjct 15487 AAGCACAAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGCCCCTC 15428 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || ||||| ||||| ||||| || | |||||||| || || || || || || || Sbjct 15427 TTCCAGCTGTTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTC 15368 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || ||||| || | || || || || || ||||| || ||||| || Sbjct 15367 CTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAACCTCGAGAGTAATTGT 15308 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || ||||| || ||||| Sbjct 15307 TTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 15275 Score = 93.3 bits (102), Expect = 1e-13 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || || ||||| | || || || | ||| || |||||||| ||||| | || ||||| Sbjct 5808 ACAAGCTGTAAGCTTGACTCCTTTTCAATTTTGTAGTCAGAAAGAGTGCGTCCATCTTCC 5867 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | || | || ||| ||| || || ||||| || | || | ||| || ||||| || Sbjct 5868 AACTGCTGGCCGGCATAAACCAGTCTTTGTTGGTCTTGTGGGACTCCCTCCTTATCTCGA 5927 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAG-TGTAATAGTCTT 104529 ||||| ||||||||||| || | ||||| |||||||| || || || | | |||| Sbjct 5928 ATCTTGGCTTTTACATTCTCGATTGTATCACTAGGTTCCACTTCGAGCTCACAAAGTC-G 5986 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| | |||| || |||| ||| Sbjct 5987 GCCAGTAAGACTCTTTATGAAGATCTTCAT 6016 >seq2 Length=118199 Score = 118 bits (130), Expect = 2e-21 Identities = 294/439 (67%), Gaps = 17/439 (4%) Strand=Plus/Minus Query 268856 CTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGA-GAAGTTCTG 268914 || || || || |||| ||||| || || || ||||| ||| | || | ||| ||||| Sbjct 63613 CTGGCTTTCTTCGCAGCCAGTGACGGAATTGTGAACGAGAATTT-GTGCATGAACTTCTG 63555 Query 268915 TCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAA 268974 |||||||| || ||||| ||||| | ||||| || || | || || || |||| || Sbjct 63554 CCAAGAGGTTCAAATTCCGGAAGCTCGTTGTTTCTATGGGATGCAAATTGCAGTAGAGAA 63495 Query 268975 TATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAA 269034 || || || |||||||| || | || ||||| || | | || | | || Sbjct 63494 CATCCACTCGGAGATGTATTCACTGCTCATCGATACCTACGTGAAAGAGC-CGGCCAAGC 63436 Query 269035 GAAAAGACTATTTTCTTCTATGAGA-----ACTATGGACTGTGTGAGaaaaaaaTCTGAA 269089 | | | || ||||| ||| || ||| || ||||||| || || | || Sbjct 63435 GTGA----TTTTCTCTTCAATGCGATTGAGACTCTGCCATGTGTGAAGAAGAAGGCGGAT 63380 Query 269090 TGGGCTCTGAAATGGATA---AACGATAGCGCGCCTTACGGAGAAAG-GTTAGTTGCTTT 269145 ||||| |||| ||||| ||| | |||| | || | || | |||| | || || Sbjct 63379 TGGGCACTGAGGTGGATCGCGAACAAAGACGCGACGTATGCGGAGCGTGTTA-TGGCGTT 63321 Query 269146 TGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAA 269205 ||| || || || || | ||||| ||||| || || ||| | ||||| ||||||||||| Sbjct 63320 TGCTGCAGTGGAGGGGGTTTTCTTCTCGGGTTCATTCGCCTCGATCTTCTGGTTGAAGAA 63261 Query 269206 AAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTT 269265 | ||||| ||||| || | || ||| |||||| ||||| ||| | ||||| ||| | Sbjct 63260 GCGTGGCCTAATGCCGGGTCTCACCTTCAGTAACGAGTTGATTAGCCGTGACGAGGGTCT 63201 Query 269266 ACACTGCGACTTCGCTTGT 269284 ||| || ||||| ||| Sbjct 63200 GCACACAGATTTCGCCTGT 63182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151159235842096