Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4364 87.8 2e-12 seq1635 87.8 2e-12 >seq4364 Length=12272 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || ||| |||||||| || ||||| || | | || | || || Sbjct 7037 CACAAGATGTAGGGTGGATTCCTTTTGGATATTGTAGTCCGAGAGGGTACGACCATCTTC 6978 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || | | || | |||||| || || || | | ||||||||| Sbjct 6977 AAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTG 6918 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||| | | | |||||||||| | | ||| || | ||| |||||||| Sbjct 6917 AATCTTAGCCTTAACATTCTCTATGGTATCACTGGGCTCGACTTCAAGTGTAATGGTTTT 6858 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 ||| |||||||| |||||||||||||||||||| Sbjct 6857 ACCAGTGAGAGTCTTCACAAAAATCTGCATCGT 6825 >seq1635 Length=24574 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || || ||||| |||| | || |||| |||||||||||||| || || Sbjct 5598 TCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCGTCTTCCAGCTGCTTACCAGCGAAA 5657 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | || || ||||| || | | ||||||||| ||| ||| ||| | | | Sbjct 5658 ATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTC 5717 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | || || || | | ||| ||||| ||||| |||||||||||||| || |||||| Sbjct 5718 TCAATCGTGTCACTCGGCTCAACCTCGAGAGTTATTGTTTTACCGGTGAGGGTCTTCACA 5777 Query 48716 AAAATCTGCAT 48726 ||||| ||||| Sbjct 5778 AAAATTTGCAT 5788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421167967608212