Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1486 122 8e-23 seq4364 107 2e-18 seq14526 104 2e-17 >seq1486 Length=25894 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || |||||||| || | ||||||||||| || | ||| || || | ||| | | Sbjct 18499 CGTAACACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGATAGAGTACGGCCA 18440 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || |||||||| || ||||||| || | ||| |||||||||||||||||||| || Sbjct 18439 TCTTCTAGCTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTA 18380 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| ||||| || ||| | || | | || || |||| ||||| Sbjct 18379 TCCTGAATTTTGGCCTTCACATTTTCGATGGAATCTGAAGGTTCAACTTCAAGAGTGATA 18320 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| | ||| || |||||||||||||| Sbjct 18319 GTTTTGCCAGTTAAAGTCTTAACAAAGATCTGCAT 18285 >seq4364 Length=12272 Score = 107 bits (118), Expect = 2e-18 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 94772 TTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTA 94831 ||| ||| || ||||| | ||| | |||||||| | ||||| || ||||| | || Sbjct 3445 TTTCACATTCTNCCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTG 3504 Query 94832 TAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGA 94891 ||||| || |||| | |||||| | ||||| ||| | || || | | ||||||| Sbjct 3505 TAATCAGACAAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGA 3564 Query 94892 TCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCG 94951 ||||||||||| ||||| || || | |||||| || || || | | | ||| | Sbjct 3565 TCTGGAGGAATTCCTTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTG 3624 Query 94952 TGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| || || ||||| ||||| || || || || ||||||||||| Sbjct 3625 GGTTCAACTTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCAT 3680 Score = 87.8 bits (96), Expect = 2e-12 Identities = 168/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| || | | ||||| || | ||| || || || |||||||| | Sbjct 3897 AAAAATTTGCATTCCACCACGGAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGAT 3956 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || | |||| ||| |||| || || ||| |||| || | |||||| Sbjct 3957 GTTGTAGTCAGAAAGAGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTG 4016 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || ||||| || || || || || || | ||| || || || || | | || || Sbjct 4017 TTGGTCTGGTGGGATTCCCTCCTTATCTTGAATCTTGGCTTTTACATTCTCAATTGTATC 4076 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||| || || || |||||||||||||| || || |||||||| Sbjct 4077 ACTAGGTTCCACTTCGAGCGTTATAGTCTTCCCAGTAAGAGTTTTTACGAAAATCTGCAT 4136 Query 95008 GCTTACAA 95015 | ||| || Sbjct 4137 GTTTAGAA 4144 >seq14526 Length=1284 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | ||| | |||||||| | ||||| || ||||| | || ||||| | Sbjct 937 CCACCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGAC 996 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | |||||| | ||||| ||| | || || | | |||||||||||||||| Sbjct 997 AAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGA 1056 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | |||||| || || || | | | ||| | | || || Sbjct 1057 ATTCCTTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACT 1116 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || ||||| ||||| || || || || ||||||||||| Sbjct 1117 TCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCAT 1163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448200353788320