Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq399 181 2e-41 seq1652 168 1e-37 seq8138 165 1e-36 seq3012 161 2e-35 >seq399 Length=44982 Score = 181 bits (200), Expect = 2e-41 Identities = 201/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||| | | |||||| ||||| || |||||||| ||||||||||| || Sbjct 19610 CGCCAAGCGTCATAGGAAGGTTCTTCGTGATAATATTCAAGGAATTACCAAGCCAGCCAT 19669 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| ||||| |||||||| || |||||| |||| || | |||||||||| | Sbjct 19670 TCGTCGTCTTGCTCGACGTGGTGGTGTAAAGCGTATCTCGGGTCTCATCTATGAAGAAAC 19729 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | |||||| ||| |||||| | |||||| | ||||| || Sbjct 19730 CCGTGGTGTCCTGAAGGTTTTCCTCGAGAACGTTATTCGTGATGCCGTTACTTATACTGA 19789 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| | |||||| | |||||||| | || ||||| || Sbjct 19790 GCACGCCAAGAGAAAGACCGTCACAGCTATGGATGTTGTCTATGCTCTAAAGCGTCAGGG 19849 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| || ||||| Sbjct 19850 ACGCACTTTGTACGGTTTCGGTGGTTAA 19877 >seq1652 Length=24454 Score = 168 bits (186), Expect = 1e-37 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||| || || || || |||||||| ||||| || ||||| |||||||| ||||| Sbjct 15909 CGTGATAATATTCAGGGTATTACCAAGCCTGCTATTCGACGTCTTGCTCGTCGAGGTGGT 15850 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| | || || | |||| ||||||| |||| |||| ||||| | || ||| Sbjct 15849 GTGAAGCGTATTTCCGGCCTCATCTACGAAGAGACCCGTGGTGTTCTGAAGGTTTTTCTC 15790 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | |||||||| || ||| | ||| || ||||||||||| | || ||||| ||| Sbjct 15789 GAAAACGTTATCCGGGACGCTGTTACCTACACTGAGCACGCTAAGAGAAAAACTGTTACC 15730 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 |||||||| | |||||||| ||||||| ||||| || | | || |||||||| || Sbjct 15729 GCCATGGATGTTGTCTATGCTCTGAAACGCCAAGGACGCACTTTGTACGGTTTTGGCGGT 15670 Query 16697 TAA 16699 ||| Sbjct 15669 TAA 15667 >seq8138 Length=5537 Score = 165 bits (182), Expect = 1e-36 Identities = 193/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||| | | ||||| |||||||||||||| ||||||||||| ||||| Sbjct 3506 CGCTAAGCGTCATAGAAAGGTGCTTCGTGATAACATCCAAGGCATCACCAAGCCTGCTAT 3565 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||| ||||| || || || | || || | | ||||| |||| Sbjct 3566 TCGTCGTCTAGCCCGTCGGGGTGGTGTAAAACGCATTTCCGGTCTAATATATGAGGAGAC 3625 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || | ||| | ||||| ||| |||||| |||||| | ||| || || Sbjct 3626 TCGTGGCGTCCTCAAGGTGTTCCTTGAGAATGTTATCAGAGATGCTGTAACCTACACTGA 3685 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || |||||||| |||||||| ||| | |||||| | ||||| || | ||||| || || Sbjct 3686 ACATGCTAAACGAAAGACTGTAACCGCAATGGATGTGGTCTACGCCCTCAAACGCCAGGG 3745 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||||| | || ||||| || Sbjct 3746 CCGTACTCTCTACGGTTTCGG 3766 >seq3012 Length=16751 Score = 161 bits (178), Expect = 2e-35 Identities = 149/189 (79%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||| || || |||||||||||||||||||| |||||||||||||||||||| Sbjct 192 CGTGATAACATTCAGGGTATCACCAAGCCAGCTATCCGACGTCTGGCTCGTCGTGGTGGT 133 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||||| |||| || | |||| || |||| ||||| ||| | ||| ||||||| Sbjct 132 GTGAAGCGCATCTCCGGTCTCATCTACGAGGAGACTCGTGGTGTGCTCAAGGTCTTCCTT 73 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||||| | |||||||||||||| || || ||||| |||||| Sbjct 72 GAGAACGTGATCCGCGATGCCGTGACTTATACCGAGCACGCGAAGCGCAAGACCGTCACC 13 Query 16637 TCCATGGAT 16645 | |||||| Sbjct 12 GCTATGGAT 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79060377254916