Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 259 6e-64 seq1443 206 3e-48 >seq2 Length=118199 Score = 259 bits (286), Expect = 6e-64 Identities = 444/637 (70%), Gaps = 13/637 (2%) Strand=Plus/Plus Query 33289 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 33348 || || || |||| ||| |||||||| ||||||||||||||| | ||||| | ||| Sbjct 63168 TGCTTGAAAATCAGACAGGCGAAATCTGTGTGCAGACCCTCGTCACGGCTAATCAACTCG 63227 Query 33349 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33408 || || ||||| || ||||||||||||||||| || | ||| || || || |||||| Sbjct 63228 TTACTGAAGGTGAGACCCGGCATTAGGCCACGCTTCTTCAACCAGAAGATCGAGGCGAAT 63287 Query 33409 GATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG 33468 || || || ||||| | || || ||||||||||| || |||| | ||| |||| || Sbjct 63288 GAACCCGAGAAGAAAACCCCCTCCACTGCAGCAAACGCCATAACACGCTCCGCATA--CG 63345 Query 33469 GCGCTGTC-ATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33522 ||| ||| ||| |||||| | | |||||||| |||||||| || ||||| ||| Sbjct 63346 TCGC-GTCTTTGTTCGCGATCCACCTCAGTGCCCAATCCGCCTTCTTCTTCACACATGGC 63404 Query 33523 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33582 | || || || ||||| |||||| | | | ||||| || || |||||| Sbjct 63405 AGAGTCTCAATCGCATTGAAGAGAAAATCACGCTTGGCCGGCTCTTTCACGTAGGTATCG 63464 Query 33583 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33642 || | || |||||| ||||| || ||||| || | || || || | || |||||| Sbjct 63465 ATGAGCAGTGAATACATCTCCGAGTGGATGTTCTCTACTGCAATTTGCATCCCATAGAAA 63524 Query 33643 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC-CGC-CAAATTTTCATTCA 33700 || | ||| || | ||| || || ||| || || |||| || |||||| || |||| Sbjct 63525 CAACGAGCTTCCGGAATTTGAACCTCTTGGCAGAA--GTTCATGCACAAATTCTCGTTCA 63582 Query 33701 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG 33760 | ||||||||||||||||| || || |||| || || ||||| | || | Sbjct 63583 CAATTCCGTCACTGGCTGCGAAGAAAGCCAGCACGTGGGAGATAAAGTGACGCTCACCAT 63642 Query 33761 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAA 33820 | ||| | | ||| ||| ||| |||||| | | || || || ||||| ||||| | Sbjct 63643 CATTCAGTCTCTCCCAGTCAGTGAGATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGA 63702 Query 33821 ATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAA 33880 | || ||| ||||||| || || | | ||| || || | |||||||| || | | || Sbjct 63703 AGGAAGCCACTGCCTTCTTGTAGAACTCCCATATATCGTGGTATTGGATGGGCATCACAA 63762 Query 33881 CAAATCTATTTGGATTTGGTGCAAGGATGGGTTCCAT 33917 |||| ||| | || || || |||||| |||||| || Sbjct 63763 CAAACCTACTGGGGTTCGGCTCAAGGAGGGGTTCAAT 63799 >seq1443 Length=26160 Score = 206 bits (228), Expect = 3e-48 Identities = 422/618 (68%), Gaps = 12/618 (2%) Strand=Plus/Plus Query 63137 TTCGAACTCGTCTCCCCAAACATTGT-CCAATCCAGGACATTCATCCGGACACATCAACG 63195 ||||||||| ||||||||| || | | ||| || || ||||| | ||| ||| || | Sbjct 13565 TTCGAACTCCTCTCCCCAA-CAGTCTGCCAGACCGGGGCATTCGTGAGGATCCATGAAAG 13623 Query 63196 ACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63254 |||| |||| ||||| | || | | ||| || |||||||||||||| ||||| | Sbjct 13624 TCCACATCTCA-TCATCATGAACCCTCTGCATGAAAAGATCAGGAATCCAGAGAGCCAGG 13682 Query 63255 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63314 || |||||||| | | | |||||| || || || | || || | |||| | Sbjct 13683 AAGAGATCTCTAGCACGAATCTCCTCGGCCCCAGTGTTTCTACGCAGCTCTATGAACTGC 13742 Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374 | | ||||| |||||| ||||| | ||||| || | | | || || || || || || Sbjct 13743 AAGACATCAGGATGCCAGGGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTCCCA 13802 Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434 || || || | || ||||||||| |||| || |||| || ||| |||| | || || Sbjct 13803 CCTTGGTCCACATACCTAGCGGTGCTATTGTACACTCGCAGCATGGGAACCAAGCCATTG 13862 Query 63435 GATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATA 63492 ||| ||||||||| |||| |||| | | || || |||||| | | | ||| | Sbjct 13863 GATTCACCATTGGTTCCGGCGATAAAAGTGCCCTTGCTACGAATACAATGCACATT--AA 13920 Query 63493 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATAC 63552 |||| | || || || | || ||||| || || ||| | || | || || ||||||| Sbjct 13921 GACCAACGCCTCCAGCGTTCTTTGAGATCAAGGCACATTGCTTGAGTGTATCGTAGATAC 13980 Query 63553 CCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT-- 63610 |||| || || || || |||| | || || |||||||| ||||| || || ||| Sbjct 13981 CCTCGATACTGTCGTCCTTCATCGTGAGAAGGAAACAGCTCGACATCTGAGGA--ACTGG 14038 Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 || |||| ||| || | || ||||| || || || ||||| |||| ||| | ||| | Sbjct 14039 TGTGCCCGAATTGAAGAGAGTCGGAGAGGCCTGAGTGAACCACTTTTGAGACATTAGGTG 14098 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 |||||||||| || | || | ||| || || || || | | || ||||| || Sbjct 14099 ATACGTCTCAAAGGCAGCTTCGAGATCATATCCGTGGATGCCCAAGGACACGCGCATAAA 14158 Query 63731 CATGTGCTGAGGTCTTTC 63748 ||| ||||| ||||| || Sbjct 14159 CATATGCTGCGGTCTCTC 14176 Score = 104 bits (114), Expect = 3e-17 Identities = 312/472 (66%), Gaps = 15/472 (3%) Strand=Plus/Plus Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045 ||||| | |||||||| ||| || ||| ||| || || || || ||||||||||| Sbjct 12154 TTGTCAATTGTGAATTTAATCGGGTCGGCTGCAGGACGGGTTCGGAGGTAGTACATTCCA 12213 Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105 || || || || |||| | || |||||||| || | || ||| | || Sbjct 12214 GTCTTCAGTCCCTTCTTCCACGCATAGAAATGCATGGAAGTGATCTTACCATAGTTGGGT 12273 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 || || |||| ||||| || ||||| ||||| ||||| | | | |||||||| Sbjct 12274 TCCTTCATGTGGAGATTCAACGACTGACTCTGATCTATGAAAGGAGCACGATCTGCAGCT 12333 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62224 | | || ||||| || |||||||| ||||| | ||| || || ||| | ||||||||| Sbjct 12334 AGATCAATAATCGTTTTCTGTGGAATCTCCCAGACAGTCTTGTACAACGC-CTTAATATC 12392 Query 62225 TTCTGGAA---GGTTTGTATTCTGAATGGATCCACCATCTGCCATAAT--CCTATTCTTG 62279 ||||||| || | | |||||| || || || || || || || || ||| Sbjct 12393 GTCTGGAATGCCGTCGATGTGCTGAATAGAACCCTGATTGGCAATTATTGCCAAT--TTG 12450 Query 62280 ATCTCATCATTCCATAATTTTC-TCTCGGTTAAAACTCTAAGGAGATGCGG--ATTAACT 62336 | | ||| ||| ||| | ||| | | |||| | | ||| || ||| || Sbjct 12451 AGGGCCTCAGACCA-AATGCCCAAATCGATGAGGTCTCTCA--ACATGTGGCTATTGACA 12507 Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 | || || |||||||| | || | || | | | |||||| ||| ||||| Sbjct 12508 ATCTGGAAATCTCCAGAAAGAACACGACGCGAAAATACATTACTCGTAATGGGTTCAGTT 12567 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62448 ||||| | ||||||| |||||||||||||||||||| ||||| ||||| Sbjct 12568 GACTCGGTGTTTCCCAGGATTTGAGCAGTTGATGCAGTGGGCATTAATGCCA 12619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622820959749920