Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1443 132 1e-25 seq2 109 1e-18 >seq1443 Length=26160 Score = 132 bits (146), Expect = 1e-25 Identities = 419/637 (66%), Gaps = 22/637 (3%) Strand=Plus/Minus Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513 |||||||||||||| ||||| || | | || ||||| | ||| | || || || Sbjct 14170 CCGCAGCATATGTTTATGCGCGTGTCCTTGGGCATCCACGGATATGATCTCGAAGCTGCC 14111 Query 363514 ATTGAAACATATAAGCTTCTAAGTGCTC----GTGTATTCACGCACGCCACGCCAACAAT 363569 |||| || ||| | || | || ||| ||| ||||| || ||| | || || | Sbjct 14110 TTTGAGACGTATCACCTAAT--GT-CTCAAAAGTGG-TTCACTCAGGCCTCTCCGACTCT 14055 Query 363570 GTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGA 363629 | |||| | || || | ||| |||||||| || || ||||| | |||||||| Sbjct 14054 CTTCAATTCGGGCACACCAGTTCCTCAGATGTCGAGCTGTTTCCTTCTCACGATGAAGGA 13995 Query 363630 CGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGC 363689 ||| ||||||||||||| || ||||| ||| | ||||| | || || ||||| || Sbjct 13994 CGACAGTATCGAGGGTATCTACGATACACTCAAGCAATGTGCCTTGATCTCAAAGAACGC 13935 Query 363690 AGGCGGAATTGGTGTATCGATCCACAATGTTCGT-GCACAGAACAGTTACATTCGCGGCA 363748 || || ||||| | | || | ||||| ||| || || || || ||| | Sbjct 13934 TGGAGGCGTTGGTCTTAATGTGCATTGTATTCGTAGCA-AGGGCACTTTTATCGCCGGAA 13876 Query 363749 CAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAAT---ACTGCGA 363805 | || | || ||||| ||||||||||||| || |||| ||||| || || | Sbjct 13875 CCAATGGTGAATCCAATGGCTTGGTTCCCATGCTGCGAGTGT---ACAATAGCACCGCTA 13819 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 |||| || ||||| ||||| ||||| || || |||||||| ||||| || || Sbjct 13818 GGTATGTGGACCAAGGTGGGAATAAGCGTCCCGGTGCTTTTGCTATATATCTAGAACCCT 13759 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925 ||| | ||| | || |||| | ||||| || | |||||| || ||||| | | Sbjct 13758 GGCATCCTGATGTCTTGCAGTTCATAGAGCTGCGTAGAAACACTGGGGCCGAGGAGATTC 13699 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985 |||| | ||||| ||| || || ||| || |||| | ||| ||| || | || | | Sbjct 13698 GTGCTAGAGATCTCTTCCTGGCTCTCTGGATTCCTGATCTTTTCATGCAGAGGGTTCATG 13639 Query 363986 CAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGA-TGTATGG 364044 | | ||| ||| | || | || |||||||| || ||||| | || ||| ||| Sbjct 13638 ATGATGAGATGTGGACTTTCATGGATCCTCACGAATGCCCCGGTCTGGCAGACTGT-TGG 13580 Query 364045 GGTGACGACTATG--TTGCTCTATACGAAAAGTATGA 364079 || || || | | ||||||| || |||||||| Sbjct 13579 GGAGAGGAGTTCGAAGCGCTCTATTCG--AAGTATGA 13545 >seq2 Length=118199 Score = 109 bits (120), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 11/220 (5%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGA----ACGTTCATTCGC 22487 ||||| ||||| |||||||| |||| ||||| |||||| || |||| || || Sbjct 63394 AAGAAGAAGGCGGATTGGGCACTGAGGTGGATCGCGAACAAAGACGCGACGT--AT--GC 63339 Query 22488 GGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGC 22547 ||| ||| |||| || ||||||| || || || ||||||| || || |||| | Sbjct 63338 GGAGCGTGTTATGGCGTTTGCTGCAGTGGAGGGGGTTTTCTTCTCGGGTTCATTCGCCTC 63279 Query 22548 AATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAAT 22607 ||||| ||| | || || |||| | ||||||||||| || || || ||||| || Sbjct 63278 GATCTTCTGGTTGAAGAAGCGTGGCCTAATGCCGGGTCTCACCTTCAGTAACGAGTTGAT 63219 Query 22608 TAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATG 22647 |||||| || |||||||| || || ||||| || ||| || Sbjct 63218 TAGCCGTGACGAGGGTCTGCACACAGATTTCGCCTGTCTG 63179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303082872277784