Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4364 116 3e-21 >seq4364 Length=12272 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || ||||| | ||||| ||| || |||||||| || ||||| || Sbjct 7054 CCACCACGAAGGCGAAGCACAAGATGTAGGGTGGATTCCTTTTGGATATTGTAGTCCGAG 6995 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || ||||||||||| || |||| | |||||| ||||| || || Sbjct 6994 AGGGTACGACCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGA 6935 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||| | | ||| | ||||| ||| ||||| Sbjct 6934 ATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTCTCTATGGTATCACTGGGCTCGACT 6875 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||||||| || ||||| || || ||||||||||| Sbjct 6874 TCAAGTGTAATGGTTTTACCAGTGAGAGTCTTCACAAAAATCTGCAT 6828 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | |||| ||| ||||||||||| |||||||| || Sbjct 3910 CCACCACGGAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAA 3969 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | |||||||| || | || | | || ||||| || ||| Sbjct 3970 AGAGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGG 4029 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||| || || || ||| | | || || | | ||| | ||||| | | || | Sbjct 4030 ATTCCCTCCTTATC-TTGAATCTTGGCTTTTACATTCTCAATTGTATCACTAGGTTCCAC 4088 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | || || || || |||||||||||||||||||||||| Sbjct 4089 TTCGAGCGTTATAGTCTTCCCAGTAAGAGTTTTTACGAAAATCTGCATG 4137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471917146606080