Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq14526 138 8e-28 seq7720 136 3e-27 seq4364 129 4e-25 seq1486 120 2e-22 seq1635 109 4e-19 >seq14526 Length=1284 Score = 138 bits (152), Expect = 8e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | || | ||||| ||||| || ||| ||||| ||||||||||||| Sbjct 935 TACCACCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAG 994 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| || | || ||||||||||| ||||| ||||| || ||||| ||||| | | Sbjct 995 ACAAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAG 1054 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || || |||||| || ||||| | | | ||| | ||||| Sbjct 1055 GAATTCCTTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAA 1114 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | |||||||||||||| || | ||| || ||||| |||||||| Sbjct 1115 CTTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCAT 1163 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | ||| | ||| ||||| ||||| || |||||||| ||| Sbjct 480 ACCACCACGAAGACGAAGCACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCATT 539 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | |||| |||| || | || || || || || || || ||||||||||| | ||| Sbjct 540 AAGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGG 599 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGA--CAGTATCTCCACTTTCA 38267 || ||| || |||||| ||| || |||||||||| | ||| ||| | ||| Sbjct 600 GATGCCCTCCTTGTCCTGAATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGC--TCA 657 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||||| |||||||| || | ||| ||||| || || ||||| Sbjct 658 ACCTCGAGAGTAATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 707 >seq7720 Length=6042 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 5967 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 5908 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 5907 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 5873 Score = 107 bits (118), Expect = 1e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || ||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| || Sbjct 3025 TTACTCTCTCTTCAGAGTACTTTTCAACTTTCCCTCATGGTACTTGTTCGCTATCGGACT 2966 Query 20004 CGCGGTAATATTTAGCCTT 20022 || || | ||||||||||| Sbjct 2965 CGTGGCAGTATTTAGCCTT 2947 >seq4364 Length=12272 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| ||||| || ||| ||||| |||||||||||||||||| || | || ||| Sbjct 3472 ACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTCT 3531 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 |||||||| ||||| ||||| || ||||| ||||| | || | ||||| || || | Sbjct 3532 AATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGA 3591 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| || ||||| | | | ||| | ||||||||| | |||||||||||| Sbjct 3592 ATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTTA 3651 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||| || ||||| |||||||| Sbjct 3652 CCAGTTAGGGTCTTGACGAAGATCTGCAT 3680 Score = 107 bits (118), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||| | ||| ||||| ||||| || |||||||| ||||| | | |||| |||| || Sbjct 3699 CACTAGATGTAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCGTCTTC 3758 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 || || || || || || || || ||||||||||| | ||||| ||| || |||||| Sbjct 3759 CAACTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTG 3818 Query 38228 AATTTTTTGCTTCACATTCTGGA--CAGTATCTCCACTTTCAACTTCTAATGTAATAGTT 38285 ||| || |||||||||| | ||| ||| | ||||| || | ||||| ||| Sbjct 3819 AATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGC--TCAACCTCGAGAGTAATTGTT 3876 Query 38286 TTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || | ||| ||||| || || ||||| Sbjct 3877 TTACCGGTGAGGGTCTTCACAAAAATTTGCAT 3908 Score = 102 bits (112), Expect = 5e-17 Identities = 165/236 (70%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | |||||| || | || | ||| ||||||||| || ||||| | Sbjct 3906 CATT-CCACCACGGAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGT 3964 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | ||| | || || ||||| || |||||||| || || | |||||| || | Sbjct 3965 CAGAAAGAGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTG 4024 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| || || || || ||| || || ||||||| | ||||| | | || Sbjct 4025 GTGGGATTCCCTCCTTATCTTGAATCTTGGCTTTTACATTCTCAATTGTATCACTAGGTT 4084 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 | ||||| | || ||||| || || || | ||||| ||||| |||||||||||| Sbjct 4085 CCACTTCGAGCGTTATAGTCTTCCCAGTAAGAGTTTTTACGAAAATCTGCATGTTT 4140 >seq1486 Length=25894 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| |||||||||||||| || ||||| || || ||||| || || Sbjct 18512 ACCACCACGAAGACGTAACACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGA 18453 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | ||| | || |||| ||||| || ||||| || | ||||||||||| | || Sbjct 18452 TAGAGTACGGCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGG 18393 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| || ||| |||||| ||||||||| | || | |||| | |||||| Sbjct 18392 AATACCTTCCTTATCCTGAATTTTGGCCTTCACATTTTCGATGGAATCTGAAGGTTCAAC 18333 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| | || |||||||| || || || || || || || |||||||| || Sbjct 18332 TTCAAGAGTGATAGTTTTGCCAGTTAAAGTCTTAACAAAGATCTGCATATT 18282 >seq1635 Length=24574 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | ||| | ||| ||||| ||||| || |||||||| ||||| Sbjct 5561 ACCACCACGAAGACGAAGCACAAGATGGAGAGTAGATTCCTTCTGGATATTGTAGTCAGA 5620 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | |||| |||| || | || || || || || || || ||||||||||| | ||| Sbjct 5621 TAGAGTACGTCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGTCGTTGTTGATCTGGGGG 5680 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||| || |||||| ||| || ||||||||||| | || || | ||||| Sbjct 5681 GATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAAC 5740 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || |||||||| || | ||| ||||| || || ||||| Sbjct 5741 CTCGAGAGTTATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 5788 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | ||| | ||| ||||| ||||| || |||||||| ||||| Sbjct 15502 ACCACCGCGAAGACGAAGCACAAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCAGA 15443 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | || | || || | ||||| || || || || || ||||||||||| | ||| Sbjct 15442 AAGAGTGCGCCCCTCTTCCAGCTGTTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGG 15383 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||| || |||||| ||| || ||||||||||| | || || | ||||| Sbjct 15382 GATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAAC 15323 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||||| ||||| || || | ||| ||||| || || ||||| Sbjct 15322 CTCGAGAGTAATTGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 15275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334881019876172