Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4364 131 1e-25 seq14526 111 1e-19 >seq4364 Length=12272 Score = 131 bits (144), Expect = 1e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || ||||| |||||| | || |||||| |||| ||| | ||||| ||| | Sbjct 6825 ACGATGCAGATTTTTGTGAAGACTCTCACTGGTAAAACCATTACACTTGAAGTCGAGCCC 6884 Query 25056 TCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| || || ||| | ||| | || | ||| ||||| ||||| ||||| || || Sbjct 6885 AGTGATACCATAGAGAATGTTAAGGCTAAGATTCAA-GACAAGGAAGGCATTCCCCCAGA 6943 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||||| |||| ||||| ||||| || | ||||||| ||| || | || || Sbjct 6944 CCAACAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGTACCCTCTCGGACTA 7003 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| ||||| |||||||| |||||| | ||||| Sbjct 7004 CAATATCCAAAAGGAATCCACCCTACATCTTGTGCT 7039 Score = 111 bits (122), Expect = 1e-19 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | || |||||| | || || | ||||| || | Sbjct 3681 AATGCAGATCTTCGTCAAGACCCTAACTGGTAAAACTATTACCCTTGAAGTTGAACCCAG 3622 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| | || || | || |||| |||| ||| || || ||||| ||||| || || Sbjct 3621 TGATTCAATTGAA--AATGTAAAAGCGAAAATTCAA-GATAAGGAAGGAATTCCTCCAGA 3565 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || |||| || ||||| ||||||||||| |||| |||||| || ||||| Sbjct 3564 TCAGCAACGTCTTATATTCGCCGGTAAACAATTAGAGGATGGCCGCACTTTGTCTGATTA 3505 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||| |||||||| || ||||| || || || ||| | || ||||| ||| Sbjct 3504 CAATATACAAAAAGAGTCTACGCTTCACTTGGTTCTACGACTTAGAGGNAGAA 3452 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || ||||| ||| | || || || | || || |||||||||| | | Sbjct 4136 ATGCAGATTTTCGTAAAAACTCTTACTGGGAAGACTATAACGCTCGAAGTGGAACCTAGT 4077 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || ||| | || |||| || | ||| || || || || || ||||| ||| Sbjct 4076 GATACAATTGAG--AATGTAAAAGCCAAGATTCAA-GATAAGGAGGGAATCCCACCAGAC 4020 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | |||||||||||||| ||||| ||||||| |||||| | || ||| Sbjct 4019 CAACAAAGACTGATTTTTGCCGGCAAGCAATTGGAAGATGGACGCACTCTTTCTGACTAC 3960 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || ||||| |||| Sbjct 3959 AACATCCAAAAGGAGTCCACCTTACA 3934 >seq14526 Length=1284 Score = 111 bits (122), Expect = 1e-19 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | || |||||| | || || | ||||| || | Sbjct 1164 AATGCAGATCTTCGTCAAGACCCTAACTGGTAAAACTATTACCCTTGAAGTTGAACCCAG 1105 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| | || || | || |||| |||| ||| || || ||||| ||||| || || Sbjct 1104 TGATTCAATTGAA--AATGTAAAAGCGAAAATTCAA-GATAAGGAAGGAATTCCTCCAGA 1048 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || |||| || ||||| ||||||||||| |||| |||||| || ||||| Sbjct 1047 TCAGCAACGTCTTATATTCGCCGGTAAACAATTAGAGGATGGCCGCACTTTGTCTGATTA 988 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| |||||||| || ||||| || || || ||| | || ||||| || Sbjct 987 CAATATACAAAAAGAGTCTACGCTTCACTTGGTTCTACGACTTAGAGGTGG 937 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || ||||||||| | || || || | || ||| | |||||||| | | Sbjct 935 ATGCAGATTTTCGTAAAGACTCTTACTGGGAAGACTATAACACTTGAAGTGGAACCTAGT 876 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || ||| | || |||| || | ||| || || || || || ||||| ||| Sbjct 875 GATACGATTGAG--AATGTAAAAGCCAAGATTCAA-GATAAGGAGGGAATCCCACCAGAC 819 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | |||||||||||||| ||||| ||||||| |||||| | || ||| Sbjct 818 CAACAAAGACTGATTTTTGCCGGCAAGCAATTGGAAGATGGACGCACTCTTTCTGACTAC 759 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || ||||| |||| Sbjct 758 AACATCCAAAAGGAGTCCACCTTACA 733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433242381428780