Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq14526 105 6e-18 seq4364 104 2e-17 >seq14526 Length=1284 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| || || ||||| || | || || ||||| |||||| | ||| |||||||| Sbjct 1164 AATGCAGATCTTCGTCAAGACCCTAACTGGTAAAACTATTACCCTTGAAGTTGAACCCAG 1105 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||||| ||| | |||||| |||||| || || ||||| |||| ||||| Sbjct 1104 TGATTCAATTGAAAATGTAAAAGCGAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCA 1045 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||| | ||||| | || || |||||||| || ||| ||| || | ||||| || Sbjct 1044 GCAACGTCTTATATTCGCCGGTAAACAATTAGAGGATGGCCGCACTTTGTCTGATTACAA 985 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||||||||||| ||||| || || || || | || || | ||||| Sbjct 984 TATACAAAAAGAGTCTACGCTTCACTTGGTTCTACGACTTAGAGGTGG 937 >seq4364 Length=12272 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| || || ||||| || | || || ||||| |||||| | ||| |||||||| Sbjct 3681 AATGCAGATCTTCGTCAAGACCCTAACTGGTAAAACTATTACCCTTGAAGTTGAACCCAG 3622 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||||| ||| | |||||| |||||| || || ||||| |||| ||||| Sbjct 3621 TGATTCAATTGAAAATGTAAAAGCGAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCA 3562 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||| | ||||| | || || |||||||| || ||| ||| || | ||||| || Sbjct 3561 GCAACGTCTTATATTCGCCGGTAAACAATTAGAGGATGGCCGCACTTTGTCTGATTACAA 3502 Query 111366 TATACAAAAAGAATCTACACTACATTTAGT 111395 |||||||||||| ||||| || || || || Sbjct 3501 TATACAAAAAGAGTCTACGCTTCACTTGGT 3472 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||||||||| || || | ||||| ||||| ||||| | || || || || Sbjct 3909 AATGCAAATTTTTGTGAAGACCCTCACCGGTAAAACAATTACTCTCGAGGTTGAGCCGAG 3850 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || || | | | || ||| || ||| ||||| || ||| | ||| ||||| Sbjct 3849 TGACTCGATAGAGAATGTGAAAGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCA 3790 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||| | || |||| || ||||| || |||||||| ||| | | || || || Sbjct 3789 ACAACGACTCATTTTCGCTGGCAAGCAGTTGGAAGACGGACGTACTCTATCTGACTACAA 3730 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || || |||||||| |||||| ||||| | || || || ||||| Sbjct 3729 TATCCAGAAGGAATCTACTCTACATCTAGTGCTTCGACTTCGTGGTGG 3682 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 111182 TAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAAC 111241 |||| ||||| ||||| || ||||| | || || || || || || | ||| ||||| Sbjct 4141 TAAACATGCAGATTTTCGTAAAAACTCTTACTGGGAAGACTATAACGCTCGAAGTGGAAC 4082 Query 111242 CCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG 111301 | || ||| | ||| | |||||| || ||| || || || || | || | Sbjct 4081 CTAGTGATACAATTGAGAATGTAAAAGCCAAGATTCAAGATAAGGAGGGAATCCCACCAG 4022 Query 111302 ATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 111361 | |||||||| || |||| ||| ||||| |||||||||||| ||| | | || | Sbjct 4021 ACCAACAAAGACTGATTTTTGCCGGCAAGCAATTGGAAGATGGACGCACTCTTTCTGACT 3962 Query 111362 ATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | || || ||||| || || || |||| | || |||||||| || ||||| Sbjct 3961 ACAACATCCAAAAGGAGTCCACCTTACACCTTGTTTTGCGTCTCCGTGGTGG 3910 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| || || | || || ||||||||||| | ||| || ||||| Sbjct 6828 ATGCAGATTTTTGTGAAGACTCTCACTGGTAAAACCATTACACTTGAAGTCGAGCCCAGT 6887 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | || || || ||| ||||| |||||| ||||| || ||| Sbjct 6888 GATACCATAGAGAATGTTAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 6947 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | ||||| | ||| ||||| || | |||||| | || | | || || ||| Sbjct 6948 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGTACCCTCTCGGACTACAAT 7007 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| ||||| || |||||| | ||| | || || || ||||| Sbjct 7008 ATCCAAAAGGAATCCACCCTACATCTTGTGCTTCGCCTTCGTGGTGG 7054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422956414170400