Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1486 161 8e-35 seq14526 150 2e-31 seq4364 150 2e-31 seq1635 100 2e-16 >seq1486 Length=25894 Score = 161 bits (178), Expect = 8e-35 Identities = 178/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||| || |||||||| |||||||| || ||||| ||||||||||||| ||| Sbjct 18279 GTTAATATGCAGATCTTTGTTAAGACTTTAACTGGCAAAACTATCACTCTTGAAGTTGAA 18338 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | | ||| || | || || | || |||||||| || ||||| |||||||| || Sbjct 18339 CCTTCAGATTCCATCGAAAATGTGAAGGCCAAAATTCAGGATAAGGAAGGTATTCCTCCA 18398 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 |||||||||||| | || ||||| ||||||||| |||| ||| ||| || | || || Sbjct 18399 GATCAACAACGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGCCGTACTCTATCGGAC 18458 Query 22393 TACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 |||||||| || || ||||| ||| | ||||| || || || | || || ||| || Sbjct 18459 TACAACATCCAGAAGGAATCTACCCTTCATTTGGTGTTACGTCTTCGTGGTGGTGTT 18515 >seq14526 Length=1284 Score = 150 bits (166), Expect = 2e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || |||| |||||||| | || |||||||| ||| ||| Sbjct 1163 ATGCAGATCTTCGTCAAGACCCTAACTGGTAAAACTATTACCCTTGAAGTTGAACCCAGT 1104 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || | ||| ||||||||||| ||||| || ||||| || ||||| Sbjct 1103 GATTCAATTGAAAATGTAAAAGCGAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAG 1044 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||||||||| ||||| ||||| ||||||||| |||||| | || |||||||| Sbjct 1043 CAACGTCTTATATTCGCCGGTAAACAATTAGAGGATGGCCGCACTTTGTCTGATTACAAT 984 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 || |||||||| || || | || || ||| | ||| Sbjct 983 ATACAAAAAGAGTCTACGCTTCACTTGGTTCTACGA 948 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | || || || || | || |||||||||||| | | Sbjct 935 ATGCAGATTTTCGTAAAGACTCTTACTGGGAAGACTATAACACTTGAAGTGGAACCTAGT 876 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || |||||||| |||||||| || ||||| || ||| Sbjct 875 GATACGATTGAGAATGTAAAAGCCAAGATTCAAGATAAGGAGGGAATCCCACCAGACCAA 816 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || ||||||||||| || || || ||| ||||| | || || |||||| Sbjct 815 CAAAGACTGATTTTTGCCGGCAAGCAATTGGAAGATGGACGCACTCTTTCTGACTACAAC 756 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || ||||| || |||||| |||| | |||||||| Sbjct 755 ATCCAAAAGGAGTCCACCTTACACCTTGTTTTGCG 721 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || | ||||||||||| | ||||| || || || | | Sbjct 707 ATGCAAATTTTTGTGAAGACCCTCACCGGTAAAACAATTACTCTCGAGGTTGAGCCGAGT 648 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || | ||| || ||||| ||||||||||| || || || |||||| Sbjct 647 GACTCGATAGAGAATGTGAAAGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCAA 588 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || || || ||||| ||| | || || || || | || ||||| Sbjct 587 CAACGACTCATTTTCGCTGGCAAGCAGCTGGAAGACGGACGTACTCTTAATGACTACAAT 528 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 || || || ||||| || | ||| |||| | || | || || |||||| Sbjct 527 ATCCAGAAGGAATCAACTCTCCATCTAGTGCTTCGTCTTCGTGGTGGTTTT 477 >seq4364 Length=12272 Score = 150 bits (166), Expect = 2e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || |||| |||||||| | || |||||||| ||| ||| Sbjct 3680 ATGCAGATCTTCGTCAAGACCCTAACTGGTAAAACTATTACCCTTGAAGTTGAACCCAGT 3621 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || | ||| ||||||||||| ||||| || ||||| || ||||| Sbjct 3620 GATTCAATTGAAAATGTAAAAGCGAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAG 3561 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||||||||| ||||| ||||| ||||||||| |||||| | || |||||||| Sbjct 3560 CAACGTCTTATATTCGCCGGTAAACAATTAGAGGATGGCCGCACTTTGTCTGATTACAAT 3501 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 || |||||||| || || | || || ||| | ||| Sbjct 3500 ATACAAAAAGAGTCTACGCTTCACTTGGTTCTACGA 3465 Score = 149 bits (164), Expect = 5e-31 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| |||||||| || ||| | || |||||||| | || |||||||| || ||| Sbjct 6827 GATGCAGATTTTTGTGAAGACTCTCACTGGTAAAACCATTACACTTGAAGTCGAGCCCAG 6886 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 |||||| | || || | || || |||||||||||||| || ||||| || || || Sbjct 6887 TGATACCATAGAGAATGTTAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 6946 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| |||||||| ||||| ||||| ||| | || ||| || ||| |||| || ||||| Sbjct 6947 ACAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGTACCCTCTCGGACTACAA 7006 Query 22398 CATTCAAAAAGAATCCACCATACAT 22422 || ||||| ||||||||| ||||| Sbjct 7007 TATCCAAAAGGAATCCACCCTACAT 7031 Score = 147 bits (162), Expect = 2e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 22200 GTTTTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCAC 22259 ||||| | |||| |||| ||||| ||||| || |||||| | || || || || | || Sbjct 4155 GTTTTGTGGATTTCTAAACATGCAGATTTTCGTAAAAACTCTTACTGGGAAGACTATAAC 4096 Query 22260 TCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGA 22319 || ||||||||| | | ||||| | || || | ||| || |||||||| ||||| Sbjct 4095 GCTCGAAGTGGAACCTAGTGATACAATTGAGAATGTAAAAGCCAAGATTCAAGATAAGGA 4036 Query 22320 GGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCG 22379 ||| || ||||| || |||||| | || || ||||||||||| || || || ||| || Sbjct 4035 GGGAATCCCACCAGACCAACAAAGACTGATTTTTGCCGGCAAGCAATTGGAAGATGGACG 3976 Query 22380 CACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||| | || || |||||||| ||||| || |||||| |||| | |||||||| Sbjct 3975 CACTCTTTCTGACTACAACATCCAAAAGGAGTCCACCTTACACCTTGTTTTGCG 3922 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || | ||||||||||| | ||||| || || || | | Sbjct 3908 ATGCAAATTTTTGTGAAGACCCTCACCGGTAAAACAATTACTCTCGAGGTTGAGCCGAGT 3849 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || | ||| || ||||| ||||||||||| || || || |||||| Sbjct 3848 GACTCGATAGAGAATGTGAAAGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCAA 3789 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || || || ||||| ||||| || || || || | || || ||||| Sbjct 3788 CAACGACTCATTTTCGCTGGCAAGCAGTTGGAAGACGGACGTACTCTATCTGACTACAAT 3729 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||| || ||||| |||| | ||| | || || || Sbjct 3728 ATCCAGAAGGAATCTACTCTACATCTAGTGCTTCGACTTCGTGGTGG 3682 >seq1635 Length=24574 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || | || || ||||| | ||||| || || || | | Sbjct 15275 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACAATTACTCTCGAGGTTGAGCCGAGT 15334 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || ||||| ||||||||||| || || || |||||| Sbjct 15335 GACACGATTGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCAA 15394 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || || || ||||||||| | || || ||||| | || || ||||| Sbjct 15395 CAACGACTCATTTTCGCTGGCAAACAGCTGGAAGAGGGGCGCACTCTTTCTGACTACAAT 15454 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTT 22448 || || || ||||| || | ||| | || | || | ||||| ||||| Sbjct 15455 ATCCAGAAGGAATCAACTCTCCATCTTGTGCTTCGTCTTCGCGGTGGTTT 15504 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || | ||||||||||| | ||||| || || || | | Sbjct 5788 ATGCAAATTTTTGTGAAGACCCTCACCGGTAAAACAATAACTCTCGAGGTTGAGCCGAGT 5729 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || ||||| ||||||||||| || || || |||||| Sbjct 5728 GACACGATTGAGAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCAA 5669 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || || || || || ||| | || || || || | || || ||||| Sbjct 5668 CAACGACTCATTTTCGCTGGTAAGCAGCTGGAAGACGGACGTACTCTATCTGACTACAAT 5609 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 || || || ||||| || | ||| | || | || | || || |||||| Sbjct 5608 ATCCAGAAGGAATCTACTCTCCATCTTGTGCTTCGTCTTCGTGGTGGTTTT 5558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419645068567780