Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2 100 6e-16 seq991 89.7 1e-12 seq7536 87.8 4e-12 seq5128 84.2 4e-11 seq395 84.2 4e-11 >seq2 Length=118199 Score = 100 bits (110), Expect = 6e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 251526 CATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTC 251585 ||| ||||||| |||||| ||||||| ||||| || |||||||| | |||||| || Sbjct 62795 CATAACACCTGCACGTTGGTATTCAGCAACACGCTTCTCAAAGAAATTGGTCTTGCCTTC 62854 Query 251586 CAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTA 251630 ||||||||| |||||| || ||||||||||||||| | ||||| Sbjct 62855 CAGAGAGATGTTCTCCATAAAATCGAAGGGGTTTGTGTCTTTGTA 62899 >seq991 Length=31322 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||| || ||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 27957 GCCCGGCTAGTTCGGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 28016 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 28017 CCCACGTTGGGC 28028 >seq7536 Length=6262 Score = 87.8 bits (96), Expect = 4e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 142506 CCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCC 142565 |||| |||||||||||||||||| | ||||||||||||| | ||||||||||||| |||| Sbjct 1897 CCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGTGCCC 1838 Query 142566 CAC 142568 ||| Sbjct 1837 CAC 1835 >seq5128 Length=10353 Score = 84.2 bits (92), Expect = 4e-11 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 117789 CGATAATCTTCGTCAATCACCCCGGCAAGAACGTCGATACCATATTTGTAGGC-CAAACC 117847 || ||||||| ||||| || || ||| ||| ||||| |||| |||| |||| |||||| Sbjct 6879 CGGTAATCTTGATCAATAACACCAGCACCAACATCGATTCCATGTTTG-AGGCACAAACC 6821 Query 117848 GCTGCGAGGAGCAATTCGGCCATAAGTTCCAGATGGAA 117885 ||||||||||||||||| |||||| |||| ||||| Sbjct 6820 ACTGCGAGGAGCAATTCGACCATAACAACCAGGTGGAA 6783 >seq395 Length=45086 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/63 (90%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 142506 CCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCC 142565 ||||| ||||||||||||||||| | ||||||||||||| | ||||||||||||| |||| Sbjct 44608 CCGGT-AGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGTGCCC 44666 Query 142566 CAC 142568 ||| Sbjct 44667 CAC 44669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027623301594292