Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq14526 161 2e-34 seq4364 161 2e-34 seq1635 134 3e-26 seq2 91.5 3e-13 seq1977 89.7 9e-13 >seq14526 Length=1284 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || ||||| || | ||||| |||||||| ||||||||||| || || | Sbjct 707 TTCCACCACGGAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAG 766 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | |||||||| || ||||| ||||| || || |||||||||||||| |||| Sbjct 767 AAAGAGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTG 826 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || || ||||| ||||||||||| || || || ||| || || || | ||| | Sbjct 827 GGATTCCCTCCTTATCTTGAATCTTGGCTTTTACATTCTCAATCGTATCACTAGGTTCCA 886 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| | || || || || || || || ||||| ||||| |||||||| Sbjct 887 CTTCAAGTGTTATAGTCTTCCCAGTAAGAGTCTTTACGAAAATCTGCAT 935 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || | ||| || | |||||||| ||||| ||||||||||| || || ||||| || Sbjct 937 CCACCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGAC 996 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| ||||| || || ||||||||||| || | ||| || || || ||| Sbjct 997 AAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGA 1056 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| |||||||| || || || || || || | || | ||| ||| Sbjct 1057 ATTCCTTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACT 1116 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||| || ||||| || || |||||||||||||| ||||||||| Sbjct 1117 TCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCATT 1164 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | || || || || || || ||||| || || || Sbjct 481 CCACCACGAAGACGAAGCACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCATTA 540 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| ||||||| |||||| || || || Sbjct 541 AGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGG 600 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| || || || ||| || | ||| | || || Sbjct 601 ATGCCCTCCTTGTCCTGAATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCAACC 660 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | || || ||||| || ||||||||||| || || || |||||| Sbjct 661 TCGAGAGTAATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCATT 708 >seq4364 Length=12272 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||||| ||||| || |||||||| || || || ||| Sbjct 7054 CCACCACGAAGGCGAAGCACAAGATGTAGGGTGGATTCCTTTTGGATATTGTAGTCCGAG 6995 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || || || || || | |||||||| || ||| Sbjct 6994 AGGGTACGACCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGA 6935 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||||||||| ||||| || ||| ||||| || | || ||| Sbjct 6934 ATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTCTCTATGGTATCACTGGGCTCGACT 6875 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || |||||||| || ||||| ||||| || || |||||||| Sbjct 6874 TCAAGTGTAATGGTTTTACCAGTGAGAGTCTTCACAAAAATCTGCAT 6828 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || ||||| || | ||||| |||||||| ||||||||||| || || | Sbjct 3908 TTCCACCACGGAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAG 3967 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | |||||||| || ||||| ||||| || || |||||||||||||| |||| Sbjct 3968 AAAGAGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTG 4027 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || || ||||| ||||||||||| || || || ||| || || || | ||| | Sbjct 4028 GGATTCCCTCCTTATCTTGAATCTTGGCTTTTACATTCTCAATTGTATCACTAGGTTCCA 4087 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| | || || || || || || || || || ||||| |||||||| Sbjct 4088 CTTCGAGCGTTATAGTCTTCCCAGTAAGAGTTTTTACGAAAATCTGCAT 4136 Score = 150 bits (166), Expect = 3e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||| || | ||| || | |||||||| ||||| ||||||||||| || || ||||| | Sbjct 3452 TTCTNCCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAG 3511 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | || | ||||| ||||| || || ||||||||||| || | ||| || || || | Sbjct 3512 ACAAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAG 3571 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| |||||||| |||||||| || || || || || || | || | ||| | Sbjct 3572 GAATTCCTTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAA 3631 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| | ||| || ||||| || || |||||||||||||| ||||||||| Sbjct 3632 CTTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCATT 3681 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || ||||| || | || | ||||| || || || || ||||| || || || | Sbjct 3680 TTCCACCACGAAGTCGAAGCACTAGATGTAGAGTAGATTCCTTCTGGATATTGTAGTCAG 3739 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | || ||||| |||||||| || ||||| ||||||| |||||| || || | Sbjct 3740 ATAGAGTACGTCCGTCTTCCAACTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGG 3799 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | ||||| |||||||| |||||||| || || || ||| || | ||| | || | Sbjct 3800 GGATGCCCTCCTTGTCCTGAATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCAA 3859 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || | || || ||||| || ||||||||||| || || || |||||| Sbjct 3860 CCTCGAGAGTAATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCATT 3909 >seq1635 Length=24574 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | || | || || || || || || ||||| || || || || Sbjct 15501 CCACCGCGAAGACGAAGCACAAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCAGAA 15442 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||| ||||| | ||| || || ||||| ||||||| |||||| || || || Sbjct 15441 AGAGTGCGCCCCTCTTCCAGCTGTTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGG 15382 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| ||||| || ||| || ||||| | || || Sbjct 15381 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAACC 15322 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || |||||||| ||||||||||| || || || ||||| Sbjct 15321 TCGAGAGTAATTGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 15275 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | || || || || || || ||||| || || || || Sbjct 5562 CCACCACGAAGACGAAGCACAAGATGGAGAGTAGATTCCTTCTGGATATTGTAGTCAGAT 5621 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| ||||||| |||||| || || || Sbjct 5622 AGAGTACGTCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGTCGTTGTTGATCTGGGGGG 5681 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| ||||| || ||| || ||||| | || || Sbjct 5682 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAACC 5741 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || ||||| || ||||||||||| || || || ||||| Sbjct 5742 TCGAGAGTTATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 5788 >seq2 Length=118199 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 10604 CTCGGCA-AAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGC 10662 || |||| ||||| || || ||||| |||| || || || ||| |||| ||||| Sbjct 63550 CTTGGCAGAAGTTCATGCACAAATTCTCGTTCACAATTCCGTCACTGGCTGCGAAGAAAG 63609 Query 10663 CGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCA 10722 | || | ||| ||| ||||| |||||| |||| |||||| | || |||||| | Sbjct 63610 CCAGCACGTGGGAGATAAAGTGACGCTCACCATCATTCAGTCTCTC---CCAGTCAGTGA 63666 Query 10723 CATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACA 10782 ||| | | | | |||||||||||||||||||| | || || ||||||||||| | Sbjct 63667 GATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGAAGGAAGCCACTGCCTTCTTGTAGA 63726 Query 10783 TCTGGAAAATGTCGGGGTACCGGATGGG 10810 || | || ||| |||| ||||||| Sbjct 63727 ACTCCCATATATCGTGGTATTGGATGGG 63754 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 10604 CTCGGCA-AAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGC 10662 || |||| ||||| || || ||||| |||| || || || ||| |||| ||||| Sbjct 73053 CTTGGCAGAAGTTCATGCACAAATTCTCGTTCACAATTCCGTCACTGGCTGCGAAGAAAG 73112 Query 10663 CGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCA 10722 | || | ||| ||| ||||| |||||| |||| |||||| | || |||||| | Sbjct 73113 CCAGCACGTGGGAGATAAAGTGACGCTCACCATCATTCAGTCTCTC---CCAGTCAGTGA 73169 Query 10723 CATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACA 10782 ||| | | | | |||||||||||||||||||| | || || ||||||||||| | Sbjct 73170 GATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGAAGGAAGCCACTGCCTTCTTGTAGA 73229 Query 10783 TCTGGAAAATGTCGGGGTACCGGATGGG 10810 || | || ||| |||| ||||||| Sbjct 73230 ACTCCCATATATCGTGGTATTGGATGGG 73257 >seq1977 Length=22071 Score = 89.7 bits (98), Expect = 9e-13 Identities = 169/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 268246 CTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGC 268305 ||| ||||| ||||||||| | ||||| || | |||| ||||||||| || | || Sbjct 2699 CTGTAGCATAAGCCACATTGCATAAACATAATCTCCAGCATAGCCCCAATCACGTTCGGC 2640 Query 268306 GTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCG 268365 | | || || || | || |||||||||| | || | || || | | || Sbjct 2639 ATTTAGATTACCAAGTTCGACAACTTCCTGCTTGCCGTGTTTAATTCGAGCGACTGCACG 2580 Query 268366 AGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGAT 268425 |||||||| ||||| || || ||||| || | | ||||||||||| || ||||| || Sbjct 2579 GGTGATTTTGCGGGTGACAAAAGTCTCTCCTCTGCGTGGGCTCTCGTGATTAAAGAGAAT 2520 Query 268426 GCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAA 268485 || || || ||||||||| ||| || || || || || || |||| || ||| | Sbjct 2519 ACCATTACAGGCGAACATGTTATAGCTTTCCCGATAATTTACAACAATCCAATAGGCATA 2460 Query 268486 CATCTTTGC 268494 | ||| || Sbjct 2459 GAGCTTAGC 2451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921435633220640