Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq4364 125 6e-24 seq14526 82.4 6e-11 >seq4364 Length=12272 Score = 125 bits (138), Expect = 6e-24 Identities = 170/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 114149 ACAAAT--ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTG 114206 |||||| ||| ||||| || | | || | ||||| || ||||| ||||| || ||| Sbjct 7063 ACAAATTAACCACCACGAAGGCGAAGCACAAGATGTAGGGTGGATTCCTTTTGGATATTG 7004 Query 114207 TAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGG 114266 || || | |||||| ||||||||| || || ||||| |||| |||||||||||| Sbjct 7003 TAGTCCGAGAGGGTACGACCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGG 6944 Query 114267 TCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTG 114326 || || ||||||||||| ||||| |||||| || | | || | ||| || || Sbjct 6943 TCTGGGGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTCTCTATGGTATCACTG 6884 Query 114327 GATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||||| || | || | ||||| || || ||||| || |||||||||||||| Sbjct 6883 GGCTCGACTTCAAGTGTAATGGTTTTACCAGTGAGAGTCTTCACAAAAATCTGCAT 6828 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | |||||| | |||| || || || ||||| |||||||| || Sbjct 3907 ATTCCACCACGGAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCA 3966 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| | ||| || || || | || || | |||||||| || Sbjct 3967 GAAAGAGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGT 4026 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || |||||| ||||| | |||| || || | | ||| Sbjct 4027 GGGATTCCCTCCTTATCTTGAATCTTGGCTTTTACATTCTCAATTGTATCACTAGGTTCC 4086 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | || || || || ||||||||||| |||||||||||| Sbjct 4087 ACTTCGAGCGTTATAGTCTTCCCAGTAAGAGTTTTTACGAAAATCTGCATG 4137 >seq14526 Length=1284 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | |||||| | |||| || || || ||||| |||||||| || Sbjct 706 ATTCCACCACGGAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCA 765 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| | ||| || || || | || || | |||||||| || Sbjct 766 GAAAGAGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGT 825 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || |||||| ||||| | |||| || || | | ||| Sbjct 826 GGGATTCCCTCCTTATCTTGAATCTTGGCTTTTACATTCTCAATCGTATCACTAGGTTCC 885 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || || ||||| ||||| ||||||||||| Sbjct 886 ACTTCAAGTGTTATAGTCTTCCCAGTAAGAGTCTTTACGAAAATCTGCAT 935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420051388269744