Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 181 2e-40 seq1443 104 4e-17 >seq2 Length=118199 Score = 181 bits (200), Expect = 2e-40 Identities = 492/744 (66%), Gaps = 27/744 (4%) Strand=Plus/Minus Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371 ||||||||||| | ||| |||||||| |||||| ||||| || | || || Sbjct 63724 TACAAGAAGGCAGTGGCTTCCTTCTGGACCGTGGAGGAGGTTGACTTGACGAAAGATCTC 63665 Query 42372 GCCGGCTGGGAGTCACTGTCTGA----GAACGAAAAGTTTTTCCTCAAAAACATACTGGC 42427 | | ||||||| |||| ||| || || | || | | || | | ||||| Sbjct 63664 ACTGACTGGGAGAGACTGAATGATGGTGAGCGTCACTTTATCTCCCA----CGTGCTGGC 63609 Query 42428 CTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGA 42487 |||||||| ||| |||||| || || || ||||| || || | ||| |||| Sbjct 63608 TTTCTTCGCAGCCAGTGACGGAATTGTGAACGAGAATTTGTGCATGAACTTCTGCCAAGA 63549 Query 42488 GGTGCAGTACTTT--GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 ||| || | || || || || || ||||| || | || || || |||||||| | Sbjct 63548 GGTTCA--AATTCCGGAAGCTCGTTGTTTCTATGGGATGCAAATTGCAGTAGAGAACATC 63491 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAAC---ACGTACATCCTGGATCCCGTCGAGCGT 42602 ||||| ||| |||| | |||||||| | || ||| | || || | | ||||| Sbjct 63490 CACTCGGAGATGTATTC---ACTGCTCATCGATACCTACGTGAAAGAGCCGGCCAAGCGT 63434 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | || ||||| || || ||||| |||| || | |||||||||||||| ||||| Sbjct 63433 GATTTTCTCTTCAATGCGATTGAGACTCTGCCATGTGTGAAGAAGAAGGCGGATTGGGCA 63374 Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 || | ||||||| || ||||| |||| | ||| | | | || ||| | || Sbjct 63373 CTGAGGTGGATCGCGAACAAAGACGCGACGTATGCGGAGCGTGTTATGGCGTTTGCTGCA 63314 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782 || ||||| | ||||||||||| | |||||||| ||||||||| | ||| || ||| Sbjct 63313 GTGGAGGGGGTTTTCTTCTCGGGTTCATTCGCCTCGATCTTCTGGTTGAAGAAG--CGTG 63256 Query 42783 TC--GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | ||||| || ||||||||| ||||| | || ||| | |||||||| ||||| | Sbjct 63255 GCCTAATGCCGGGTCTCACCTTCAGTAACGAGTTGATTAGCCGTGACGAGGGTCTGCACA 63196 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGG 42900 || || ||||| || | ||| | ||| || | ||||||| ||| |||| | Sbjct 63195 CAGATTTCGCCTGTCTGATTTTC---AAGCACATCGTGAACAAGCCGTCGGCTAAGCGTG 63139 Query 42901 TCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGC 42960 ||| | ||||| || || || ||||| ||| || |||||||| | | || | Sbjct 63138 TCCATGAGATCATGCGTGATGCTGTTGAGATTGAGTGTGAATTCCTCACTGACGCTCTTC 63079 Query 42961 CCGTGTCCCTGGTCGGCATGAAC-CACGACCTCATGTGCAAGTACATCCAGTACGTCGCC 43019 |||| || | ||||||||| ||| | |||||| ||||||| || || || Sbjct 63078 CCGTTGATTTGATTGGCATGAACTGTCGA-TTGATGTGCCAGTACATAAGATATGTGGCT 63020 Query 43020 GACCATCTCCTGTGCCAGATGGGT 43043 |||| || ||| | || ||||| Sbjct 63019 GACCGCCTTCTGAGTGAGCTGGGT 62996 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||||||||| ||||||||||||||||| |||| ||||||||||| || || |||||||| Sbjct 62885 CCCCTTCGATTTTATGGAGAACATCTCTCTGGAAGGCAAGACCAATTTCTTTGAGAAGCG 62826 Query 43130 CGTCGCCGACTACCA 43144 || || || ||||| Sbjct 62825 TGTTGCTGAATACCA 62811 >seq1443 Length=26160 Score = 104 bits (114), Expect = 4e-17 Identities = 283/427 (66%), Gaps = 16/427 (4%) Strand=Plus/Plus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCC---TC 245059 |||||||||||||| || || || |||||||| ||| ||||||| || || | | || Sbjct 13644 ACCCTCTGCATGAAAAGATCAGGAATCCAGAGAGCCAGGAAGAGATCTCTAGCACGAATC 13703 Query 245060 TGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAG 245119 | |||| || |||||||| | | |||||| | || | ||||| || |||||| Sbjct 13704 TCCTCGGCC---CCAGTGTTTCTACGCAGCTCTATGAACTGCAAGACATCAGGATGCCAG 13760 Query 245120 GGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTC 245179 || || | || | ||| | || ||||| ||||| || || || |||||||| ||| Sbjct 13761 GGTTCTAGATATATAGCAAAAGCACCGGGACGCTTATTCCCACCTTGGTCCACATACCTA 13820 Query 245180 TCGAGCGC-GTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCC 245238 || | || ||| | | ||||| | || || | ||| || || | || ||||| || Sbjct 13821 GCG-GTGCTATTGTACACTCGCAGCATGGGAACCAAGCCATTGGATTCACCATTGGTTCC 13879 Query 245239 CTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT----GCCTAGTCCGCCGG 245294 ||| | | ||||||| || | | | ||| |||| || | || || | Sbjct 13880 GGCGATAAAAGTGCCCTTG---CTACGAATAC-AATGCACATTAAGACCAACGCCTCCAG 13935 Query 245295 CGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCG 245354 ||| ||| ||||| | ||| || ||||| || || || ||||| || ||||| Sbjct 13936 CGTTCTTTGAGATCAAGGCACATTGCTTGAGTGTATCGTAGATACCCTCGATACTGTCGT 13995 Query 245355 ACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACA 245414 |||||| |||| || || ||| |||| ||| || || ||| ||| ||||| | Sbjct 13996 CCTTCATCGTGAGAAGGAAACAGCTCGACATCTGAGGAACTGGTGTGCCCGAATTGAAGA 14055 Query 245415 GAGTGGG 245421 |||| || Sbjct 14056 GAGTCGG 14062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944147829661120