Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1635 123 3e-23 seq14526 84.2 2e-11 seq4364 82.4 8e-11 >seq1635 Length=24574 Score = 123 bits (136), Expect = 3e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || |||||||| |||| ||||| || |||| || ||||||||||||||||| Sbjct 5598 TCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCGTCTTCCAGCTGCTTACCAGCGAAA 5657 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 |||||||| || || || | || | || |||||||||| ||| | || | || | | Sbjct 5658 ATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACATT 5716 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| |||| || || |||| || || ||||| || || || ||||| || Sbjct 5717 CTCAATCGTGTCACTCGGCTCAACCTCGAGAGTTATTGTTTTACCGGTGAGGGTCTTCAC 5776 Query 42197 AAAGATTTGCAT 42208 ||| |||||||| Sbjct 5777 AAAAATTTGCAT 5788 >seq14526 Length=1284 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | || | ||||| || | || ||| ||||| ||||||||||||| Sbjct 936 ACCACCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGA 995 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| || | || |||| || ||||| |||||||| || || ||||| || | || Sbjct 996 CAAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGG 1055 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||| | | ||| |||| | ||| | | | | | || || | ||| | Sbjct 1056 AATTCCTTCCTTAT-CTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAA 1114 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || | || || ||||| || ||||| ||||| || ||||| |||||| Sbjct 1115 CTTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCATT 1164 >seq4364 Length=12272 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| ||||| ||||||||||||| || ||| || | || |||| || ||||| ||||| Sbjct 3489 CTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAA 3548 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||| || || ||||| || | || | | ||||| | | ||| |||| | ||| | Sbjct 3549 TATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTAT-CTTGAATTTTCGCTTTTACAT 3607 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | | || || | ||| || || | || || ||||| || ||||| ||||| | Sbjct 3608 TTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGA 3667 Query 42196 CAAAGATTTGCATT 42209 | ||||| |||||| Sbjct 3668 CGAAGATCTGCATT 3681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543102717926080