Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq4364 132 5e-26 seq14526 113 5e-20 seq1635 95.1 1e-14 >seq4364 Length=12272 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| ||||| | || ||||| ||||| || ||||| || | || ||| || | || Sbjct 7040 AAGCACAAGATGTAGGGTGGATTCCTTTTGGATATTGTAGTCCGAGAGGGTACGACCATC 6981 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||||||||||||| ||| | || || ||||| ||||| || ||||| ||||| || || Sbjct 6980 TTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTC 6921 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| ||| ||| | ||||||| || || ||||| | || | ||| Sbjct 6920 TTGAATCTTAGCCTTAACATTCTCTATGGTATCACTGGGCTCGACTTCAAGTGTAATGGT 6861 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||| || || ||||| ||||| Sbjct 6860 TTTACCAGTGAGAGTCTTCACAAAAATCTGCAT 6828 Score = 122 bits (134), Expect = 9e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||| |||||||| || | | ||||| | ||||| | ||||||||| Sbjct 3940 GTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCTTCCAATTGCTTGCCG 3999 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| || | || ||||| || || ||||| || || ||||| || || ||| Sbjct 4000 GCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTTATCTTGAATCTTGGCTTTT 4059 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | |||||||| | |||||||| | |||| ||||| || || | |||| Sbjct 4060 ACATTCTCAATTGTATCACTAGGTTCCACTTCGAGCGTTATAGTCTTCCCAGTAAGAGTT 4119 Query 64427 TTTACGAAAATTTGCATTTT 64446 ||||||||||| ||||| || Sbjct 4120 TTTACGAAAATCTGCATGTT 4139 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| ||| || |||||||| || |||||||| | | ||||| | || || | || Sbjct 3478 TGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTCTAATTGT 3537 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | || || || ||||| || |||||||||||||| || ||||| ||||| Sbjct 3538 TTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATTTTC 3597 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 |||||| || | || ||||| || || ||||| | || | || || || || Sbjct 3598 GCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTTACCAGTT 3657 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 | || || ||||| || |||||| Sbjct 3658 AGGGTCTTGACGAAGATCTGCATT 3681 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | || |||||||||||| | || ||||| || || || ||||| || | Sbjct 3682 CCACCACGAAGTCGAAGCACTAGATGTAGAGTAGATTCCTTCTGGATATTGTAGTCAGAT 3741 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || ||||||| | ||||||||| || ||||||| || || || || || || Sbjct 3742 AGAGTACGTCCGTCTTCCAACTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGG 3801 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCAC-CGGCGTCCA 64394 || || || || || || | | || ||||| ||| ||| | | |||| |||| || | Sbjct 3802 ATGCCCTCCTTGTCCTG-AATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGC-TCAA 3859 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | || | ||| | || || ||||| | || || || |||||||||||| Sbjct 3860 CCTCGAGAGTAATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCATT 3909 >seq14526 Length=1284 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||| |||||||| || | | ||||| | ||||| | ||||||||| Sbjct 739 GTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCTTCCAATTGCTTGCCG 798 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| || | || ||||| || || ||||| || || ||||| || || ||| Sbjct 799 GCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTTATCTTGAATCTTGGCTTTT 858 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||||||| | |||||||| | |||| ||||| || || | ||| Sbjct 859 ACATTCTCAATCGTATCACTAGGTTCCACTTCAAGTGTTATAGTCTTCCCAGTAAGAGTC 918 Query 64427 TTTACGAAAATTTGCAT 64443 ||||||||||| ||||| Sbjct 919 TTTACGAAAATCTGCAT 935 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| ||| || |||||||| || |||||||| | | ||||| | || || | || Sbjct 961 TGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTCTAATTGT 1020 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | || || || ||||| || |||||||||||||| || ||||| ||||| Sbjct 1021 TTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATTTTC 1080 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 |||||| || | || ||||| || || ||||| | || | || || || || Sbjct 1081 GCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTTACCAGTT 1140 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 | || || ||||| || |||||| Sbjct 1141 AGGGTCTTGACGAAGATCTGCATT 1164 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||||||||| | || ||||| || || || ||||| || | || || |||| Sbjct 495 AAGCACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCATTAAGAGTACGTCCGTC 554 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||| || ||||||| || || || || || || || || || || || Sbjct 555 TTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTC 614 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACG 64408 || | | || ||||| ||| ||| | | |||| |||| || || || | ||| | Sbjct 615 CTG-AATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGC-TCAACCTCGAGAGTAATT 672 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || ||||| | || || || |||||||||||| Sbjct 673 GTTTTACCGGTGAGGGTCTTCACAAAAATTTGCATT 708 >seq1635 Length=24574 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| ||||| | || ||||| || || || ||||| || | | || || |||| Sbjct 5576 AAGCACAAGATGGAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCGTC 5635 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| |||||||| || || ||||||| || || || || || || || || || || || Sbjct 5636 TTCCAGCTGCTTACCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTC 5695 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGG 64409 || || || ||| ||| ||| | || |||| |||| || || || | ||||| | Sbjct 5696 CTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGC-TCAACCTCGAGAGTTATTG 5754 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || ||||| | || || || ||||||||||| Sbjct 5755 TTTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 5788 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | |||||| ||||| | || ||||| || || || ||||| || | Sbjct 15502 ACCACCGCGAAGACGAAGCACAAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCAGA 15443 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | ||||| ||||| ||||| || ||||||| || || || || || || Sbjct 15442 AAGAGTGCGCCCCTCTTCCAGCTGTTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGG 15383 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCA 64394 || || || || || || || || ||| ||| ||| | || |||| |||| || | Sbjct 15382 GATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGC-TCAA 15324 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | ||| | || || || || | || || || ||||||||||| Sbjct 15323 CCTCGAGAGTAATTGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 15275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499543546981280