Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4364 100 3e-16 seq14526 84.2 2e-11 seq1486 84.2 2e-11 >seq4364 Length=12272 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||||||| | |||| | | ||||||||||| ||||||||||| Sbjct 3910 CCACCACGGAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAA 3969 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || | ||| || |||| | | || || | |||||||| || || Sbjct 3970 AGAGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGG 4029 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || || || ||| | || | ||||| | || | || || | | ||||| Sbjct 4030 ATTCCCTCCTTATC-TTGAATCTTGGCTTTTACATTCTCAATTGTATCACTAGGTTCCAC 4088 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| ||| | || || ||||| ||||||||||| |||||||||||| Sbjct 4089 TTCGAGCGTTATAGTCTTCCCAGTAAGAGTTTTTACGAAAATCTGCATG 4137 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 138411 ATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTG 138470 ||||| | | || |||||||| || |||||||| | ||||| || || || || Sbjct 7031 ATGTAGGGTGGATTCCTTTTGGATATTGTAGTCCGAGAGGGTACGACCATCTTCAAGCTG 6972 Query 138471 TTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTT 138530 || || | | |||| |||||||||||||| || || || ||||| ||||| ||| | | Sbjct 6971 CTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTC-TTGAATCT 6913 Query 138531 TTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAG 138589 | | |||| | || | ||| || | | ||| || || | || | |||||||||| Sbjct 6912 TAGCCTTAACATTCTCTATGGTATCACTGGGCTCGACTTCAAGTGTAATGGTTTTACCAG 6853 Query 138590 TCAGAGTTTTTACAAAAATCTGCAT 138614 | ||||| || |||||||||||||| Sbjct 6852 TGAGAGTCTTCACAAAAATCTGCAT 6828 >seq14526 Length=1284 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||||||| | |||| | | ||||||||||| ||||||||||| Sbjct 709 CCACCACGGAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAA 768 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || | ||| || |||| | | || || | |||||||| || || Sbjct 769 AGAGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGG 828 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || || || ||| | || | ||||| | || | || || | | ||||| Sbjct 829 ATTCCCTCCTTATC-TTGAATCTTGGCTTTTACATTCTCAATCGTATCACTAGGTTCCAC 887 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| ||||| ||||| ||||||||||| Sbjct 888 TTCAAGTGTTATAGTCTTCCCAGTAAGAGTCTTTACGAAAATCTGCAT 935 >seq1486 Length=25894 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || || ||||| | | | || ||||| || ||||||||||| Sbjct 18511 CCACCACGAAGACGTAACACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAT 18452 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || || ||||| || | | |||| | ||| ||||| || ||||| Sbjct 18451 AGAGTACGGCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 18392 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| || || ||| |||| | || | | ||| | || || | | || || Sbjct 18391 ATACCTTCCTTATC-CTGAATTTTGGCCTTCACATTTTCGATGGAATCTGAAGGTTCAAC 18333 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| | ||| || ||||| |||||||| Sbjct 18332 TTCAAGAGTGATAGTTTTGCCAGTTAAAGTCTTAACAAAGATCTGCAT 18285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496161832424640