Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq14526 131 1e-25 seq4364 125 5e-24 seq1486 118 8e-22 >seq14526 Length=1284 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | || || ||| || ||||| ||||| ||||||||||| |||||||| Sbjct 937 CCACCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGAC 996 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | || ||||||||||| || ||| |||| | ||| || || || ||| Sbjct 997 AAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGA 1056 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || |||||| ||||||| |||| || | ||| || ||| || Sbjct 1057 ATTCCTTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACT 1116 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | |||||| |||||||| || || || || || || || ||||| Sbjct 1117 TCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCAT 1163 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 |||| ||| || || || || || || || ||||| || | ||| | | ||||||| Sbjct 499 ACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCATTAAGAGTACGTCCGTCTTCC 558 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||||||| | || | || ||||| || || || || |||||||| | Sbjct 559 AGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGA 618 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||| ||| | ||||| | || || || || || | ||||| |||||| Sbjct 619 ATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCAACCTCGAGAGTAATTGTTTTA 678 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || |||||||||||||| Sbjct 679 CCGGTGAGGGTCTTCACAAAAATTTGCAT 707 >seq4364 Length=12272 Score = 125 bits (138), Expect = 5e-24 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 14953 CCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGA 15012 |||| | || || ||| || ||||| ||||| ||||||||||| |||||||| | | Sbjct 3457 CCTCTAAGTCGTAGAACCAAGTGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAA 3516 Query 15013 ATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATT 15072 | | | || ||||||||||| || ||| |||| | ||| || || || |||||| Sbjct 3517 GTGCGGCCATCCTCTAATTGTTTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATT 3576 Query 15073 CCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCT 15132 |||||||| || |||||| ||||||| |||| || | ||| || ||| || || Sbjct 3577 CCTTCCTTATCTTGAATTTTCGCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCA 3636 Query 15133 AAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | |||||| |||||||| || || || || || || || ||||| Sbjct 3637 AGGGTAATAGTTTTACCAGTTAGGGTCTTGACGAAGATCTGCAT 3680 Score = 109 bits (120), Expect = 4e-19 Identities = 158/222 (71%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||| | || | ||| || || ||||| |||||||| || ||| | | | ||| Sbjct 3925 AAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCT 3984 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || ||||| ||||| || | |||| | |||||||| ||| ||||| ||||| || Sbjct 3985 TCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTTATCT 4044 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||| ||| ||||||| | || || ||||| ||| ||| || || | || || || Sbjct 4045 TGAATCTTGGCTTTTACATTCTCAATTGTATCACTAGGTTCCACTTCGAGCGTTATAGTC 4104 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT-GAAAT 15185 || || || ||||||||||| ||||| ||||| ||| ||||| Sbjct 4105 TTCCCAGTAAGAGTTTTTACGAAAATCTGCATGTTTAGAAAT 4146 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || ||||| || ||||| || ||| | | | ||||| | || Sbjct 7031 ATGTAGGGTGGATTCCTTTTGGATATTGTAGTCCGAGAGGGTACGACCATCTTCAAGCTG 6972 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||||| | || | |||||||||||| ||||| ||||||||||| ||| || Sbjct 6971 CTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTT 6912 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| | ||||| ||||| || || || || | |||||||||||||| || Sbjct 6911 AGCCTTAACATTCTCTATGGTATCACTGGGCTCGACTTCAAGTGTAATGGTTTTACCAGT 6852 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || |||||||| ||||| Sbjct 6851 GAGAGTCTTCACAAAAATCTGCAT 6828 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || | |||| ||| || ||||| || || || || ||||| || Sbjct 3682 CCACCACGAAGTCGAAGCACTAGATGTAGAGTAGATTCCTTCTGGATATTGTAGTCAGAT 3741 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | ||||||| || || ||||||||| | || | || ||||| || || Sbjct 3742 AGAGTACGTCCGTCTTCCAACTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGG 3801 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || |||||||| ||| || ||| ||| | ||||| | || || || || Sbjct 3802 ATGCCCTCCTTGTCCTGAATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCAACC 3861 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||||| |||||||| || || || || |||||||||||||| Sbjct 3862 TCGAGAGTAATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 3908 >seq1486 Length=25894 Score = 118 bits (130), Expect = 8e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| || |||||||||||||| || || || |||||||| || Sbjct 18511 CCACCACGAAGACGTAACACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGAT 18452 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||||| ||||||||||| | |||||||| ||||| || ||| Sbjct 18451 AGAGTACGGCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 18392 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || ||||||| || ||| |||| || | ||| | ||| || Sbjct 18391 ATACCTTCCTTATCCTGAATTTTGGCCTTCACATTTTCGATGGAATCTGAAGGTTCAACT 18332 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || || ||||| || || | ||| || ||||| || |||||||| Sbjct 18331 TCAAGAGTGATAGTTTTGCCAGTTAAAGTCTTAACAAAGATCTGCATATT 18282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357321385148420