Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4364 104 2e-17 seq14526 95.1 1e-14 seq1635 86.0 6e-12 >seq4364 Length=12272 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| || || ||||||||||||||||| || || || ||| | ||| || Sbjct 7037 CACAAGATGTAGGGTGGATTCCTTTTGGATATTGTAGTCCGAGAGGGTACGACCATCTTC 6978 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || || | || | || || ||||| || ||||||||||| || ||||| Sbjct 6977 AAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTG 6918 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||| || || | |||| ||| || | ||||||||| || |||| ||||| Sbjct 6917 AATCTTAGCCTTAACATTCTCTATGGTATCACTGGGCTCGACTTCAAGTGTAATGGTTTT 6858 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342 || || ||||| || |||||||| ||||||| Sbjct 6857 ACCAGTGAGAGTCTTCACAAAAATCTGCATCG 6826 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | ||||||||| || || |||||||| |||||||| || || Sbjct 3679 ATTCCACCACGAAGTCGAAGCACTAGATGTAGAGTAGATTCCTTCTGGATATTGTAGTCA 3738 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || ||||| || || || ||| | || | |||||| || || || Sbjct 3739 GATAGAGTACGTCCGTCTTCCAACTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGG 3798 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || ||||| || ||| | |||| | ||| | ||| Sbjct 3799 GGGATGCCCTCCTTGTCCTGAATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCA 3858 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||||| ||||| ||||| || || || |||||||||||||| Sbjct 3859 ACCTCGAGAGTAATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 3908 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || ||||| | ||| || || || | || || ||||||||||| || || || Sbjct 3907 ATTCCACCACGGAGACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCA 3966 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| |||||||| || || || | |||| || ||| ||||| || Sbjct 3967 GAAAGAGTGCGTCCATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGT 4026 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || ||||||||||| || ||| | || | || || || || Sbjct 4027 GGGATTCCCTCCTTATCTTGAATCTTGGCTTTTACATTCTCAATTGTATCACTAGGTTCC 4086 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || | || || || || ||||||||||| ||||| ||||| Sbjct 4087 ACTTCGAGCGTTATAGTCTTCCCAGTAAGAGTTTTTACGAAAATCTGCAT 4136 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || ||||| || || ||||| ||||| ||||| | || ||| || |||||| Sbjct 3478 TGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTCTAATTGT 3537 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| |||| | |||||||| || || ||||| ||||| |||||||||||||| Sbjct 3538 TTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATTTTC 3597 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | ||| | | || | || ||||| || |||| ||||| || ||| Sbjct 3598 GCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTTACCAGTT 3657 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || ||||| Sbjct 3658 AGGGTCTTGACGAAGATCTGCAT 3680 >seq14526 Length=1284 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||||||||| || ||||||||||| |||||||| || || | | || || || Sbjct 498 CACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCATTAAGAGTACGTCCGTCTTC 557 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || || || ||| | || | |||||| || || || || ||||| || || || || Sbjct 558 CAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTG 617 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||| || ||| | |||| | ||| | ||| || |||||||||| ||||| Sbjct 618 AATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCAACCTCGAGAGTAATTGTTTT 677 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || |||||||||||||| Sbjct 678 ACCGGTGAGGGTCTTCACAAAAATTTGCAT 707 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || ||||| || || ||||| ||||| ||||| | || ||| || |||||| Sbjct 961 TGAAGCGTAGACTCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTCTAATTGT 1020 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| |||| | |||||||| || || ||||| ||||| |||||||||||||| Sbjct 1021 TTACCGGCGAATATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATTTTC 1080 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | ||| | | || | || ||||| || |||| ||||| || ||| Sbjct 1081 GCTTTTACATTTTCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTTACCAGTT 1140 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || ||||| Sbjct 1141 AGGGTCTTGACGAAGATCTGCAT 1163 >seq1635 Length=24574 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | ||| ||||| || ||||||||||| |||||||| || || Sbjct 15501 CCACCGCGAAGACGAAGCACAAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCAGAA 15442 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || |||| ||||| || ||| | || | |||||| || || || || Sbjct 15441 AGAGTGCGCCCCTCTTCCAGCTGTTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGG 15382 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || || ||||| || || | || | ||||| | ||| || Sbjct 15381 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAACC 15322 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||||| ||||| || || || || || |||||||||||||| Sbjct 15321 TCGAGAGTAATTGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 15275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451911601551520