Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 111 2e-19 seq4319 87.8 2e-12 >seq2 Length=118199 Score = 111 bits (122), Expect = 2e-19 Identities = 172/243 (71%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 || || ||| ||| ||||||||||||||| || | || || |||| ||||| Sbjct 63186 GCGAAATCTGTGTGCAGACCCTCGTCACGGCTAATCAACTCGTTACTGAAGGTGAGACCC 63245 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || || ||||||||||||||||| |||| ||||| || |||||||| | | Sbjct 63246 GGCATTAGGCCACGCTTCTTCAACCAGAAGATCGAGGCGAATGAACCCGAGAAGAAAACC 63305 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTG-TATCAAA 127698 |||||||| || ||||| | | |||||| ||| | | || | ||||| | | | Sbjct 63306 CCCTCCACTGCAGCAAACGCCATAACACGCTCCGCATACG-TCGCGTCTTTGTTCGCGAT 63364 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758 |||| ||| ||||| | ||||| |||| | |||||| | |||| ||||| | || Sbjct 63365 CCACCTCAGTGCCCAATCCGCCTTCTTCTTCACACATGGCAGAGTCTCAATCGCATTGAA 63424 Query 127759 GAG 127761 ||| Sbjct 63425 GAG 63427 >seq4319 Length=12421 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 176831 GGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTC 176890 || || ||||| || |||||||||| ||||| ||||||||||| || || | ||| || Sbjct 9733 GGAAAGACACCATATCGATCACGACCGACCACTGAGAGACCAGCCACCGCTAAGGTTTTG 9792 Query 176891 GCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTG 176950 || ||||| ||||| || | ||||| ||||| || || | || ||||| | | Sbjct 9793 GCTGAATCTCCCTCGGTGAGAATGAGAGTACAATTAATTGAATTCTTTGTTCCCGCGTCG 9852 Query 176951 TTCGCATCGTCCAACTTGGGAATACC 176976 || ||||| |||| ||| || ||||| Sbjct 9853 TTGGCATCATCCAGCTTCGGGATACC 9878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613382872765920