Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1635 123 6e-23 seq4364 114 3e-20 seq14526 105 2e-17 seq5571 87.8 4e-12 >seq1635 Length=24574 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||| |||||||| || ||||| |||| |||||||||| | ||| Sbjct 5568 CGAAGACGAAGCACAAGATGGAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGTA 5627 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| |||||||||||||| || ||||| ||||| || || || || || || || Sbjct 5628 CGTCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCC 5687 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| |||||| || | ||||| | | || || || | Sbjct 5688 TCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAACCTCGAGA 5747 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| ||||| || |||||||||||||| Sbjct 5748 GTTATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTG 5785 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||| |||||||| || ||||| |||| |||||||||| | ||| Sbjct 15495 CGAAGACGAAGCACAAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCAGAAAGAGTG 15436 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||||||||| || || ||||| ||||| || || || || || || || Sbjct 15435 CGCCCCTCTTCCAGCTGTTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCC 15376 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| |||||| || | ||||| | | || || || | Sbjct 15375 TCCTTGTCCTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAACCTCGAGA 15316 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || |||||||||||||| Sbjct 15315 GTAATTGTTTTTCCAGTGAGGGTCTTCACAAAAATTTG 15278 >seq4364 Length=12272 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||| || || || || |||||||||| |||||||| | | || Sbjct 7048 CGAAGGCGAAGCACAAGATGTAGGGTGGATTCCTTTTGGATATTGTAGTCCGAGAGGGTA 6989 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||| || || ||||| |||||||| ||||| || ||| ||| Sbjct 6988 CGACCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATGCCT 6929 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| || || | ||| || | | || || || | Sbjct 6928 TCCTTGTCTTGAATCTTAGCCTTAACATTCTCTATGGTATCACTGGGCTCGACTTCAAGT 6869 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| |||||||| ||||||||||| || Sbjct 6868 GTAATGGTTTTACCAGTGAGAGTCTTCACAAAAATCTG 6831 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || || || ||||| || ||||| |||| |||||||||| | ||| Sbjct 3688 CGAAGTCGAAGCACTAGATGTAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGTA 3747 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| ||||||| |||||| || ||||| ||||| || || || || || || || Sbjct 3748 CGTCCGTCTTCCAACTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCC 3807 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||| || | | ||| | | || || || | Sbjct 3808 TCCTTGTCCTGAATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCAACCTCGAGA 3867 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| ||||| || |||||||||||||| Sbjct 3868 GTAATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTG 3905 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 |||||||| | || ||||||||||||| ||||||||||| | ||| | |||||||||| Sbjct 3928 ACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCTTCC 3987 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | ||||| ||||| || || || | || ||||| || ||||| || || ||| Sbjct 3988 AATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTTATCTTGA 4047 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| || || || | || || | | ||| || || | ||| || ||||| Sbjct 4048 ATCTTGGCTTTTACATTCTCAATTGTATCACTAGGTTCCACTTCGAGCGTTATAGTCTTC 4107 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || ||||| || Sbjct 4108 CCAGTAAGAGTTTTTACGAAAATCTG 4133 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || |||||||| || ||||| |||| ||||||||| | ||| Sbjct 3305 CGAAGACGAAGCACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCATTAAGAGTA 3364 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| |||||||||||||| || ||||| ||||| || || || || || || || Sbjct 3365 CGTCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCC 3424 Query 199529 TCTCGCTCCTGAATCTT 199545 || ||||||||||| Sbjct 3425 TCCTTGTCCTGAATCTT 3441 >seq14526 Length=1284 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || |||||||| || ||||| |||| ||||||||| | ||| Sbjct 487 CGAAGACGAAGCACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAGTCATTAAGAGTA 546 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| |||||||||||||| || ||||| ||||| || || || || || || || Sbjct 547 CGTCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCC 606 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||| || | | ||| | | || || || | Sbjct 607 TCCTTGTCCTGAATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCAACCTCGAGA 666 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| ||||| || |||||||||||||| Sbjct 667 GTAATTGTTTTACCGGTGAGGGTCTTCACAAAAATTTG 704 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 |||||||| | || ||||||||||||| ||||||||||| | ||| | |||||||||| Sbjct 727 ACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCTTCC 786 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | ||||| ||||| || || || | || ||||| || ||||| || || ||| Sbjct 787 AATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTTATCTTGA 846 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| || || || | || || | | ||| || || | || || ||||| Sbjct 847 ATCTTGGCTTTTACATTCTCAATCGTATCACTAGGTTCCACTTCAAGTGTTATAGTCTTC 906 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| || Sbjct 907 CCAGTAAGAGTCTTTACGAAAATCTG 932 >seq5571 Length=9446 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 || || |||||||| | ||| ||| ||||| |||| | || ||||||||||||| Sbjct 7208 AGATGAAGAGTCGATTGCTTCAGGATATTGTATTCAGTAATGGTATGTCCATCTTCCAGC 7267 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 || || || || || | ||| || || || | ||| | || || || |||||||| Sbjct 7268 TGTTTACCAGCAAAAACGAGTCGTTGATGTTGTGGAGAGATGCCCTCCTTAGCCTGAATC 7327 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 || ||||||| || | ||||| ||| || || || | || || || ||||| Sbjct 7328 TTCGCCTTCACGTTCTCTATCGTGTCACTTGGCTCAACGTCAAGTGTAATTGTTTTACCG 7387 Query 199604 GTGAGAGTTTTCACAAAAATTTG 199626 | ||| || |||||||||||||| Sbjct 7388 GAGAGGGTCTTCACAAAAATTTG 7410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178676718826204