Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1635 120 3e-22 seq4364 111 2e-19 seq14526 98.7 1e-15 >seq1635 Length=24574 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | ||| ||||| |||||||||||||| |||||||| || | Sbjct 5573 ACGAAGCACAAGATGGAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGTACGTCC 5632 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||| || ||||| || | || || || || | || | || |||||| Sbjct 5633 GTCTTCCAGCTGCTTACCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTT 5692 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||| | || | | |||||| |||| || || || | || || Sbjct 5693 GTCCTGAATCTTCGCCTTCACATTCTCAATCGTGTCACTCGGCTCAACCTCGAGAGTTAT 5752 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || || || || ||||| |||||||| Sbjct 5753 TGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCAT 5788 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| |||||||||||||| || ||||||||| | || || ||||| ||||| ||||| Sbjct 15465 TCCTTCTGGATATTGTAGTCAGAAAGAGTGCGCCCCTCTTCCAGCTGTTTGCCAGCGAAA 15406 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || || || || | || | || |||||||||| |||||| ||| | || Sbjct 15405 ATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTC 15346 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| |||| || || || | || || ||||| || || || || || ||| Sbjct 15345 TCAATCGTGTCACTCGGCTCAACCTCGAGAGTAATTGTTTTTCCAGTGAGGGTCTTCACA 15286 Query 46583 AAGATTTGCAT 46593 || |||||||| Sbjct 15285 AAAATTTGCAT 15275 >seq4364 Length=12272 Score = 111 bits (122), Expect = 2e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||| | ||| ||||| |||||||||||||| |||||||| || |||| || Sbjct 3699 CACTAGATGTAGAGTAGATTCCTTCTGGATATTGTAGTCAGATAGAGTACGTCCGTCTTC 3758 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | ||||||||| ||||| || | || || || || | || | || |||||||||| Sbjct 3759 CAACTGCTTGCCAGCGAAAATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTG 3818 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| || | || | | || ||| |||| || || || | || || ||||| Sbjct 3819 AATCTTCGCTTTCACATTCTCTATCGAGTCACTCGGCTCAACCTCGAGAGTAATTGTTTT 3878 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || || || || ||||| ||||||||| Sbjct 3879 ACCGGTGAGGGTCTTCACAAAAATTTGCATT 3909 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| || || || || || |||||||||||| |||||||| || |||||||| | Sbjct 3921 ACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCC 3980 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | ||||||||||| || |||| | || ||||| | || | | |||||| Sbjct 3981 ATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTT 4040 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || ||||| || | || | | || || || | |||||| || | ||| || Sbjct 4041 ATCTTGAATCTTGGCTTTTACATTCTCAATTGTATCACTAGGTTCCACTTCGAGCGTTAT 4100 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || || || || ||||| || || || ||||| || Sbjct 4101 AGTCTTCCCAGTAAGAGTTTTTACGAAAATCTGCATGTT 4139 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||||||||||||||| || || || || | || || ||||||||||| || || Sbjct 7018 TCCTTTTGGATATTGTAGTCCGAGAGGGTACGACCATCTTCAAGCTGCTTGCCAGCAAAG 6959 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||| ||||| | || | || |||||||| ||||| ||| | || Sbjct 6958 ATAAGACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTC 6899 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || || || | || || || | || |||||||| || || || || || ||| Sbjct 6898 TCTATGGTATCACTGGGCTCGACTTCAAGTGTAATGGTTTTACCAGTGAGAGTCTTCACA 6839 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 6838 AAAATCTGCAT 6828 >seq14526 Length=1284 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| |||||||||||||| ||||| || |||| || ||||||||||| ||||| Sbjct 517 TCCTTCTGGATATTGTAGTCATTAAGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAAA 576 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || || || || | || | || |||||||||| |||||| || | || Sbjct 577 ATGAGTCGTTGTTGATCTGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCTTTCACATTC 636 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || ||| |||| || || || | || || ||||| || || || || || ||| Sbjct 637 TCTATCGAGTCACTCGGCTCAACCTCGAGAGTAATTGTTTTACCGGTGAGGGTCTTCACA 696 Query 46583 AAGATTTGCATT 46594 || ||||||||| Sbjct 697 AAAATTTGCATT 708 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| || || || || || |||||||||||| |||||||| || |||||||| | Sbjct 720 ACGCAAAACAAGGTGTAAGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTGCGTCC 779 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | ||||||||||| || |||| | || ||||| | || | | |||||| Sbjct 780 ATCTTCCAATTGCTTGCCGGCAAAAATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCCTT 839 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || ||||| || | || | | ||| || || | |||||| || | || || Sbjct 840 ATCTTGAATCTTGGCTTTTACATTCTCAATCGTATCACTAGGTTCCACTTCAAGTGTTAT 899 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || || || || || ||||| Sbjct 900 AGTCTTCCCAGTAAGAGTCTTTACGAAAATCTGCAT 935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565123854438240