Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq14526 87.8 1e-12 seq4364 87.8 1e-12 >seq14526 Length=1284 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 |||||||||||||| ||||| | |||| ||| |||| || |||||||| ||| | || Sbjct 973 TCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAAT 1032 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | ||| |||||||| | || | ||||| || || ||||| ||| | | Sbjct 1033 ATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATTTTCGCTTTTACATTT 1092 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | || || | ||| || || | ||||| |||||||| |||| || || ||| Sbjct 1093 TCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACG 1152 Query 39709 AAGATCTGCAT 39719 ||||||||||| Sbjct 1153 AAGATCTGCAT 1163 >seq4364 Length=12272 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 |||||||||||||| ||||| | |||| ||| |||| || |||||||| ||| | || Sbjct 3490 TCTTTTTGTATATTGTAATCAGACAAAGTGCGGCCATCCTCTAATTGTTTACCGGCGAAT 3549 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | ||| |||||||| | || | ||||| || || ||||| ||| | | Sbjct 3550 ATAAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATTTTCGCTTTTACATTT 3609 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | || || | ||| || || | ||||| |||||||| |||| || || ||| Sbjct 3610 TCAATTGAATCACTGGGTTCAACTTCAAGGGTAATAGTTTTACCAGTTAGGGTCTTGACG 3669 Query 39709 AAGATCTGCAT 39719 ||||||||||| Sbjct 3670 AAGATCTGCAT 3680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347300965411796