Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2 219 4e-52 seq1635 118 1e-21 seq4364 113 5e-20 >seq2 Length=118199 Score = 219 bits (242), Expect = 4e-52 Identities = 422/615 (69%), Gaps = 8/615 (1%) Strand=Plus/Plus Query 132880 TGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCG 132939 |||||||| |||| || || || || |||| |||||||| | | ||| | ||| Sbjct 63168 TGCTTGAAAATCAGACAGGCGAAATCTGTGTGCAGACCCTCGTCACGGCTAATCAACTCG 63227 Query 132940 TTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAA 132999 || ||||| || | || ||||| ||||| || || || | ||| || || | |||||| Sbjct 63228 TTACTGAAGGTGAGACCCGGCATTAGGCCACGCTTCTTCAACCAGAAGATCGAGGCGAAT 63287 Query 133000 CTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTG 133059 ||||| ||||| || ||||| || || || || |||| | ||||| | |||| Sbjct 63288 GAACCCGAGAAGAAAACCCCCTCCACTGCAGCAAACGCCATAACACGCTCCGCATACGTC 63347 Query 133060 GCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATC 133119 || |||||| | |||||||| | ||| ||||| || ||||| | || || || |||| Sbjct 63348 GCGTCTTTGTTCGCGATCCACCTCAGTGCCCAATCCGCCTTCTTCTTCACACATGGCAGA 63407 Query 133120 GTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACG--CACGTAGGTGTCGA 133177 || || || || || || | | | | | ||| || | ||||||||| |||| Sbjct 63408 GTCTCAATCGCATTGAAGAGAA--AATCACGCTTGGCCGGCTCTTTCACGTAGGTATCGA 63465 Query 133178 TGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGC 133237 |||| |||||||| |||||||| | |||||| | || ||||| | || || || | Sbjct 63466 TGAGCAGTGAATACATCTCCGAGTGGATGTTCTCTACTGCAATTTGCATCCCATAGAAAC 63525 Query 133238 ACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGA 133297 | || || || | || || ||||| ||| | | || ||| ||||| || | Sbjct 63526 AACGAGCTTCCGGAATTTGAACCTCTTGGCAGAAGTTCATGCACAAATTCTCGTTCACAA 63585 Query 133298 TGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGT 133357 | ||||| ||||| ||||| || ||||||||||| ||| || || ||||| || | Sbjct 63586 TTCCGTCACTGGCTGCGAAGAAAGCCAGCACGTGGGAGATAAAGTGACGCTCACCATCAT 63645 Query 133358 TCAAGCGCTCCCAGTC-GCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAAC 133416 ||| | ||||||||| | | | || || | || ||| |||||||| |||||||| || Sbjct 63646 TCAGTCTCTCCCAGTCAGTGAG-ATCTTTCGTCAAGTCAACCTCCTCCACGGTCCAGAAG 63704 Query 133417 GACGCCTCGGCTTTTTTGTACATACT-CCACATGTCCGAATATTGTATGGGAAAAATCAC 133475 || ||| | || || ||||| | ||| ||| || || ||||| ||||| | | || Sbjct 63705 GAAGCCACTGCCTTCTTGTAGA-ACTCCCATATATCGTGGTATTGGATGGGCATCACAAC 63763 Query 133476 AAACCGGCGGGGGTT 133490 ||||| | |||||| Sbjct 63764 AAACCTACTGGGGTT 63778 Score = 102 bits (112), Expect = 8e-17 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 133281 CAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAA 133340 || ||| ||||| || || ||||| ||||| ||||| || ||||||||||| ||| || Sbjct 73072 CAAATTCTCGTTCACAATTCCGTCACTGGCTGCGAAGAAAGCCAGCACGTGGGAGATAAA 73131 Query 133341 ATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTC-GCGCGTGTCCTTGGACAGGTCCACCT 133399 || ||||| || |||| | ||||||||| | | | || || | || ||| |||| Sbjct 73132 GTGACGCTCACCATCATTCAGTCTCTCCCAGTCAGTGAG-ATCTTTCGTCAAGTCAACCT 73190 Query 133400 CCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACT-CCACATGTCCGAATAT 133458 |||| |||||||| || || ||| | || || ||||| | ||| ||| || || ||| Sbjct 73191 CCTCCACGGTCCAGAAGGAAGCCACTGCCTTCTTGTAGA-ACTCCCATATATCGTGGTAT 73249 Query 133459 TGTATGGGAAAAATCACAAACCGGCGGGGGTT 133490 || ||||| | | ||||||| | |||||| Sbjct 73250 TGGATGGGCATCACAACAAACCTACTGGGGTT 73281 >seq1635 Length=24574 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || ||||| || || |||| || ||| | | Sbjct 15275 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACAATTACTCTCGAGGTTGAGCCGAGT 15334 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | | || | || || | ||||| ||||| || ||| | || || Sbjct 15335 GACACGATTGAGAATG-TGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCAGATCA 15393 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || ||||||| ||| |||||||||||||| || | |||||| || |||||||| Sbjct 15394 ACAACGACTCATTTTCGCTGGCAAACAGCTGGAAGAGGGGCGCACTCTTTCTGACTACAA 15453 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | || || ||| | ||||| ||| Sbjct 15454 TATCCAGAAGGAATCAACTCTCCATCTTGTGCTTCGT 15490 >seq4364 Length=12272 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || |||||||| || | || |||||| ||| Sbjct 6828 ATGCAGATTTTTGTGAAGACTCTCACTGGTAAAACCATTACACTTGAAGTCGAGCCCAGT 6887 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| | || || | ||||| || || |||||| | |||||| Sbjct 6888 GATACCATAGAGAATGTTAAGGCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 6947 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| ||||| || || | || |||||| |||||||| Sbjct 6948 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGTACCCTCTCGGACTACAAT 7007 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||||| | || || ||| | ||||| || Sbjct 7008 ATCCAAAAGGAATCCACCCTACATCTTGTGCTTCG 7042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500071439982080