Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq5843 226 2e-53 seq2737 147 2e-29 seq14732 138 9e-27 seq1335 129 4e-24 >seq5843 Length=8949 Score = 226 bits (250), Expect = 2e-53 Identities = 933/1454 (64%), Gaps = 18/1454 (1%) Strand=Plus/Minus Query 517264 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 517323 |||||| | ||||||||||| || | || || || || || || ||||| || || | Sbjct 7287 CACATTCAAGATACCATTGGCGTCTATGTCGAAGGTCACCTCTATCTGAGGCACACCACG 7228 Query 517324 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 517383 |||| || ||||| || ||| | ||| | |||| ||| ||||| ||||| | Sbjct 7227 AGGAGCCGGAGGGATGCCAGACAACTCAAACTTCCCCAACAGATTGTTATCCTTAGTCAT 7168 Query 517384 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 517443 || ||||||||| | | || || || | | || || || || || || || Sbjct 7167 CGAACGCTCACCCTCGTACACCTGAATCAACACACCTGGCTGGTTGTCCGAGTACGTAGT 7108 Query 517444 AAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 517502 || |||| | | ||| |||||||| || || | | || | | ||||| | Sbjct 7107 GAAGG-TCTGTGTCTGTTTGGTTGGAATTGTAGTATTGCGTTTGATGAGAGGTGTCATCA 7049 Query 517503 TACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTT 517562 |||||| || || || | ||||||||| | ||||| | ||| | |||| | || | Sbjct 7048 CACCACCCGCGGTCTCCAGACCAAGAGACAATGGAGTAATATCCAAGAGGAGCAGATCCT 6989 Query 517563 GAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 517621 | | | || | | ||| |||| | | || || || | ||| || || || || Sbjct 6988 GCACTGCCTCCGACTTGTCACCTGACAATATT-GCCGCCTGCACAGCCGCTCCGTACGCC 6930 Query 517622 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAG 517680 || || || || ||||| | | | || | | ||| ||||| || | || | Sbjct 6929 ACTGCCTCGTCCGGATTGATCGACTTGTTCAACTCACGACCGTTGAAGAAGTCCTGCAGC 6870 Query 517681 AAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTG 517740 || || | ||||| |||||||| | || ||||||||||||||||||||||| | Sbjct 6869 AACTTCTGC-ACCTTTGGAATACGCGTCGAACCTCCAACTAATACAATTTCATGGATTAA 6811 Query 517741 TGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAA 517800 ||||||| ||| | ||| | |||| ||||| ||| |||| |||| || Sbjct 6810 GCCCTTATCCATTTTAGCATCACGCAGGGCTTTCTCAACTGGTATAAGAGTGTCTCTGAA 6751 Query 517801 CAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCC 517860 || || ||||||||| |||||| ||| | ||||| ||| || |||| || || Sbjct 6750 CAGATCACCACAAAGTTCCTCGAATCGAGCACGAGTAATGGTGGTATAGAAATCTATGCC 6691 Query 517861 TTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGC 517920 || ||||| || || | || || | | |||| ||| || | | || || Sbjct 6690 CTCAAACAATGAGTCGATCTCGATATTGGCCTGAGCACTGGAACTGAGGGTTCTCTTTGC 6631 Query 517921 ACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGA--TTCAAATCTGTT 517978 | || | ||| || |||| | || | ||| | || ||| || | || | Sbjct 6630 CCTCTCGCTTGCAGTTCTTAAACGACGAATAGCTCT--CTTATTTCCCTTTATGTCCTTC 6573 Query 517979 TTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTT 518036 || || ||| |||||| || | | || | ||| | || | ||||||||||||||||| Sbjct 6572 TTGTACTTTTGCTTGAATTCGTTAGCAAA--ATGATTAACCAAACGATTATCAAAATCTT 6515 Query 518037 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 518096 |||| ||||| | || | || | || | | || | ||| | || || |||| | Sbjct 6514 CACCACCCAAGTGCGTGTCACCAGCAGTCGACTTCACCTCGAAGATGCCGTCCTCAATCG 6455 Query 518097 ACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 518156 | | || | |||||| ||| || ||||||| |||||| || | ||||| ||| Sbjct 6454 AGAGAATGGACACATCAAAGGTGCCGCCACCCAAATCAAAGATCAACACATTGCGTTCAG 6395 Query 518157 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 518216 | || || || | ||||||||| | ||||| ||||| || || || || |||| Sbjct 6394 CTCCCACCTTCTTGTCCAAACCATACGCGATGGCAGCCGCAGTGGGCTCGTTGATGATTC 6335 Query 518217 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 518276 | ||| || | || | || || ||||| || |||||||| | || | |||| Sbjct 6334 GAAGAACGTTCAAGCCCGATATGGCACCAGCATCCTTCGTGGCTTGACGCTGACAGTCGT 6275 Query 518277 TAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTG 518336 | || || || || |||||||| || ||||| | ||| ||| |||| ||||| | Sbjct 6274 TGAAGTAGGCCGGCACAGTAATGACTGCATCTTTCACTGTTTTCCCAAGGTAAGCCTCAG 6215 Query 518337 CCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGG 518396 | || | ||||| || || | ||| || || || | ||||| | | ||| Sbjct 6214 CTGTCTCCTTCATCTTCAACAACACCATGGAGGAGATCTCTTCTGCAAAGAACGACTTCT 6155 Query 518397 ATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATG 518456 ||| | || ||| || | | ||||| ||| | || | || | || | Sbjct 6154 TCTCACCCTTGTACATTACCTCGATCTTCGGTTTGCCTCCAGCGTTGACCACATGGAAAG 6095 Query 518457 GCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATC-TCTACCAATTAATCGT 518515 |||| | ||||||||| || ||| ||| || || |||| | |||||| | ||| Sbjct 6094 GCCAATGTTTCATATCATCCTGTACAACTTGATC-TTCGAATCGACGACCAATAAGACGT 6036 Query 518516 TTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCA 518575 || || || || | || ||| || || || || |||| | || |||||||| ||| Sbjct 6035 TTGGCGTCGAACACTGTGTTGTCAGGGTTCATGGCTACTTGGTTCTTAGCTGCATCGCCA 5976 Query 518576 ATCAGATGTTC-TGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATC 518634 |||| | | || ||| ||||| || | ||||| ||||| || ||||| || ||||| Sbjct 5975 ATCAAACGCTCGTGT-TCTGTGAACGCGACATAACTAGGAGTAGTACGATTGCCCTGATC 5917 Query 518635 ATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCC 518694 ||| ||||| || ||||| || |||| ||| | ||||| ||||| ||||| ||||| Sbjct 5916 ATTTGCAATGATATCAACCTTGCCATGTTGGAACACACCAACACAGGAGAAAGTGGTTCC 5857 Query 518695 TAAATCAATACCAA 518708 ||||| ||||||| Sbjct 5856 CAAATCTATACCAA 5843 >seq2737 Length=17923 Score = 147 bits (162), Expect = 2e-29 Identities = 386/585 (66%), Gaps = 8/585 (1%) Strand=Plus/Plus Query 518098 CAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTT 518157 ||| |||| ||||| ||| |||||||||| ||| || | ||| | ||| |||| | Sbjct 15613 CAAGAGAGAGACATCGAAGGTGCCACCACCCAAATCGAATACAAGGATGTTCTTTTCGCT 15672 Query 518158 GTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCT 518217 |||| | ||||| | ||| || |||| ||| || |||||||||||||| || || | Sbjct 15673 TTCTT---TCTTATCCAAACCGTAGGCAATAGCTGCGGCAGTTGGTTCATTGATGATACG 15729 Query 518218 CAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTT 518277 | | | | ||||||||||| ||||||||||| || ||||| | ||| | ||| || Sbjct 15730 AAGGATAGTTAGACCAGCAATGGCACCTGCATCTTTGGTTGCTTGACGTTGAGCATCATT 15789 Query 518278 AAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGC 518337 || || || || || || | ||||||| || || |||| | |||||| || Sbjct 15790 GAAGTAGGCTGGCACGGTCACTACGGCATGGGTAACCGGAGTACCGAGATAAGCCTCAGC 15849 Query 518338 CGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGA 518397 | ||||| || | |||| ||| | || | || ||| || | | |||| Sbjct 15850 AACCTCCTTCATCTTGCCCAAAACCATGGCCGAGACTTCTTCAGGAGCGAAAGCCTTGAC 15909 Query 518398 TTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGG 518457 |||| | | ||||| | |||||||| | ||| || || ||||| || || Sbjct 15910 CTCATCGCCAACTTGAACTTCCATGTATGGTTTGTCACCCTTCTTGATGACTTTGAAAGG 15969 Query 518458 CCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTT 518517 | ||||||||| |||||| | |||| ||| || || || | || || Sbjct 15970 ATATCGTTTCATATCCTCCTGAACATCCTTATCATCAAAGGTTCGGCCTATAAGACGCTT 16029 Query 518518 TGCATCAAAAATAGTATTGGTTGGATT-AATTGCAGCTTGATATTTGGCTGCATCTCCAA 518576 |||||||||| |||||| | || || || ||| ||| | |||||| ||||| || | Sbjct 16030 GGCATCAAAAAGAGTATTTCTAGGGTTCGATGTCAG-TTGGTTTTTGGCAGCATCGCCGA 16088 Query 518577 TCAGATGTT---CTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGAT 518633 | ||| ||| | || | ||| || | || || || || || | || || || |||| Sbjct 16089 TAAGACGTTCACCAGTGTTTGTGAAAGCGACGTACGACGGTGTGATACGGTTGCCCTGAT 16148 Query 518634 CATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 518678 | || || || |||||||| ||||||| | ||||| |||| Sbjct 16149 CGTTTGCGATGATTTCAACCCGTCCATTTTTGAAGACACCAACAC 16193 Score = 132 bits (146), Expect = 4e-25 Identities = 352/538 (65%), Gaps = 6/538 (1%) Strand=Plus/Plus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 ||||| |||||| ||| | |||| || || |||| | |||||||||||||| ||| Sbjct 14771 TTATCTTCGGCAGACACTTGCAGAAGGCCGTTCACATCAATTTCAAATGTGACTTCGATT 14830 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 || |||| || | |||| || || || || | || ||| | |||| || | Sbjct 14831 TGTGGGATACCGCGTGGAGCCGGAGGAATGCCAGTAAGATCGAATTTACCCAAGAAATGA 14890 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429 |||||||| || || |||||||| || | | ||||| || || | ||| | | Sbjct 14891 TTATCTTTGGTCAAGGGACGTTCACCTTCATAGACCTGGATGGTGACAGTTGGTTGGTCA 14950 Query 517430 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 517489 || | | ||| | || ||| || || || ||||||| ||||| || |||| Sbjct 14951 TCAGCAGCAGTAGAGAAGACTTGAGACTTCTTTGTAGGAATTACGGTGTTCCTGCCAATG 15010 Query 517490 ATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 517549 | || ||||||| |||||| | || || | ||| |||| ||| || |||||||| Sbjct 15011 AGTTTTGTCATAACACCACCAACAGTCTCAATACCCAGAGTAAGTGGGCAGACATCAAGA 15070 Query 517550 AGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCA 517609 || || |||| | | |||| | |||| | | | | ||||| | |||| Sbjct 15071 AGAACGATATCACCAGTATCTTCAAC------ACCACTTATGACACCAGCTTGCACAGCA 15124 Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 ||||||||||||||||| |||||||| || | | | ||| | || ||||||||| Sbjct 15125 GCACCATATGCAACAGCCTCATCAGGGTTGATACCTCTGCTTAACTCCTTGCCATTGAAA 15184 Query 517670 AAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATT 517729 || | | | |||| | ||||| ||||| | || || || ||||| || ||||| Sbjct 15185 AATTCTTTGACGAGTTCTTGAACCTTTGGAATTCTAGTCGAGCCACCAACCAAGACAATA 15244 Query 517730 TCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 517787 ||||| | | | ||| | || | || ||| | ||| ||||| || |||| || Sbjct 15245 TCATGAATATCTTCTTTTTTGAGATCCGAGTCCTTCATAACATTTTCTACTGGTTTAA 15302 >seq14732 Length=1210 Score = 138 bits (152), Expect = 9e-27 Identities = 185/255 (73%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 518453 AATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT-CTACCAATTAA 518511 || ||||| | ||||||||| || ||| ||| || || |||| | |||||| | Sbjct 157 AAGGGCCAATGTTTCATATCATCCTGTACAACTTGATC-TTCGAATCGACGACCAATGAG 215 Query 518512 TCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATC 518571 ||||| |||||||||||||| ||| ||||| || || | || | || || ||||| Sbjct 216 ACGTTTGGCATCAAAAATAGTGTTGACAGGATTCATAGCCACCTGGTTCTTAGCAGCATC 275 Query 518572 TCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTG 518631 || |||||| | || || || || || | ||||| |||||| | ||||| || || Sbjct 276 ACCGATCAGACGCTCGGTGTCGGTGAAAGCGACATAACTTGGAGTGATTCGATTGCCCTG 335 Query 518632 ATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGT 518691 ||||| ||||||||||| || || |||| ||| | ||||| |||||| || ||||| Sbjct 336 GTCATTAGCAATAATTTCCACCTTGCCATGTTGAAACACACCAACACAAGAGAAGGTTGT 395 Query 518692 TCCTAAATCAATACC 518706 ||| ||||| ||||| Sbjct 396 TCCCAAATCGATACC 410 >seq1335 Length=27242 Score = 129 bits (142), Expect = 4e-24 Identities = 166/226 (73%), Gaps = 5/226 (2%) Strand=Plus/Plus Query 668854 AGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACG 668913 ||| |||| |||||||||||||| || |||||||| |||||||| || | ||||| || Sbjct 17880 AGGCAAAGCTGGTCGTATTAGAGGCAACTTGATGGGCAAACGTGTTGACTTTTCTGCTCG 17939 Query 668914 TACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTTATTAT 668973 |||||||||||| ||||||| ||| |||| || || ||||||| ||||| | || Sbjct 17940 GACAGTTATTACTGCTGATCCAAATCTTGCCCTTGATCAAGTTGGAGTTCCCCGATCAAT 17999 Query 668974 TGCTAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGAGTATTTGACTCA 669033 |||| | ||||| || || ||| || || || |||||||| || | || | Sbjct 18000 TGCTCAGAATCTCACGTTCCCTGAACGCGTCACTCAAGCGAATATTGATTACCT-ACAAA 18058 Query 669034 -ATTAGTGAAAAATGGTAAAAGAGTATATCCGGGTGCCAATTTTGT 669078 ||||||||| ||||||| | | ||||| || ||||| ||||| Sbjct 18059 GATTAGTGAATAATGGTACCA---TGTATCCAGGAGCCAAGTTTGT 18101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780017907157672