Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenolepis_20nana_20[genbank_20GCA_5F000951275.1_202014-09-25] 16,212 sequences; 162,943,536 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1443 122 1e-22 seq2 95.1 2e-14 >seq1443 Length=26160 Score = 122 bits (134), Expect = 1e-22 Identities = 421/648 (65%), Gaps = 23/648 (4%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| | ||||| ||||| || | | || ||||| || | ||| | || ||| Sbjct 14170 CCGCAGCATATGTTTATGCGCGTGTCCTTGGGCATCCACGGATATGATCTCGAAGCTGCC 14111 Query 111672 TTGGAGACATACGACAAGATGTCCC----GTGGTATGTTCATCCACGCAACACCAACCCT 111727 || ||||| || || ||||| | ||||| ||| || || | || || || Sbjct 14110 TTTGAGACGTATCACCTAATGTCTCAAAAGTGGT----TCACTCAGGCCTCTCCGACTCT 14055 Query 111728 CTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787 |||||| | || |||||| || || ||||| || ||||||||| | | | ||||| Sbjct 14054 CTTCAATTCGGGCACACCAGTTCCTCAGATGTCGAGCTGTTTCCTTCTCACGATGAAGGA 13995 Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847 || ||| | || || |||| || |||| |||||||| ||||||||| || Sbjct 13994 CGACAGTATCGAGGGTATCTACGATACACTCAAGCAATGTGCCTTGATCTCAAAGAACGC 13935 Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTAC 111907 ||| || | || | | | ||| | | | ||| || ||| || || Sbjct 13934 TGGAGGCGTTGGTCTTAATGTGCATTGTATTCGTAGCAAGGGCACTTTTATCGCCGGAAC 13875 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 |||||| |||| |||| | |||| ||||| || || | || ||| || | || Sbjct 13874 CAATGGTGAATCCAATGGCTTGGTTCCCATGCTGCGAGTGTACAATAGCACCGCTAGGTA 13815 Query 111968 TGTAAACCAAGCTGGG------CGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 ||| |||||| |||| |||| | || || | || | ||||| || || || Sbjct 13814 TGTGGACCAAGGTGGGAATAAGCGTCCC---GGTGCTTTTGCTATATATCTAGAACCCTG 13758 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCG 112081 ||| | ||| || || ||||| | ||| ||||| ||| || | |||||| || Sbjct 13757 GCATCCTGATGTCTTGCAGTTCATAGAGCTGCGTAGAAACACTGGGGCCGAGGAGATTCG 13698 Query 112082 GTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 ||| | ||||||||| |||||||||||||| ||||| |||||| |||| ||| | | Sbjct 13697 -TGCTAGAGATCTCTTCCTGGCTCTCTGGATTCCTGATCTTTTCATGCAGAGGGTTCATG 13639 Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGA-TGCCGT 112198 | || | ||| || || | ||| || || || |||||||| | || || | Sbjct 13638 ATGATGAGATGTGGACTTTCATGGATCCTCACGAATGC-CCCGGTCTGGCAGACTGTTG- 13581 Query 112199 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG 112246 ||| |||||||| ||||| ||||| | ||||| ||| |||| |||| Sbjct 13580 GGGAGAGGAGTTCGAAGCGCTCTATTCGAAGTATGAGAAAGAGGGTCG 13533 Score = 89.7 bits (98), Expect = 6e-13 Identities = 165/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 113103 GGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTT 113162 ||||| ||||| | || | | |||||||| || |||||| ||||||| || || Sbjct 12425 GGTTCTATTCAGCACATCGACGGCATTCCAGACGATATTAAGGCGTTGTACAAGACTGTC 12366 Query 113163 TGGGAAAT--CA-AGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATT 113219 ||||| || || ||| || ||| ||||| | || |||||||||| || ||||| Sbjct 12365 TGGGAGATTCCACAGAA-AACGATT--ATTGATCTAGCTGCAGATCGTGCTCCTTTCATA 12309 Query 113220 GATCAAAGTCAAAGTATGAATCTATTCATGGAA-AGTCCAACGATGTCCAAGCTCTCTTC 113278 ||||| ||||| ||||||| |||| | | ||||| ||| ||| || |||| Sbjct 12308 GATCAGAGTCAGTCGTTGAATCTCCACATGAAGGAACCCAACTATGGT-AAGATCACTTC 12250 Query 113279 TATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCGA 113333 ||||| | || ||||||||||| || || || || ||||| ||||||||| Sbjct 12249 CATGCATTTCTATGCGTGGAAGAAGGGACTGAAGACTGGAATGTACTACCTCCGA 12195 >seq2 Length=118199 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 102114 CCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA-CAAAGTCGCGTTC 102172 |||||| | | ||||| ||||||||||| ||| |||| | | | ||||| |||| | Sbjct 63403 CCATGTGTGAAGAAGAAGGCGGATTGGGCACTGAGGTGGATCGCGAACAAAGACGCGA-C 63345 Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 | ||| ||||| | | || ||||| || ||||| | |||||||| ||||| || Sbjct 63344 GTATGCGGAGCGTGTTATGGCGTTTGCTGCAGTGGAGGGGGTTTTCTTCTCGGGTTCATT 63285 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 | | | || | ||| | |||||||| || || ||||| |||||| |||| ||||| Sbjct 63284 CGCCTCGATCTTCTGGTTGAAGAAGCGTGGCCTAATGCCGGGTCTCACCTTCAGTAACGA 63225 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 | | || ||||||||||| || ||| ||| || || Sbjct 63224 GTTGATTAGCCGTGACGAGGGTCTGCACACAGATTTCGC 63186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620616606552640